Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 74.4 | 84.55 |
| GSMUA_Achr10P... | Banana | nucleus | 74.8 | 81.3 |
| KRH74025 | Soybean | nucleus | 62.8 | 66.11 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 62.8 | 65.69 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 58.0 | 65.61 |
| Solyc04g014820.2.1 | Tomato | cytosol | 35.0 | 65.3 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 62.4 | 65.27 |
| KRH14098 | Soybean | nucleus | 62.2 | 64.93 |
| PGSC0003DMT400037271 | Potato | nucleus | 60.2 | 64.04 |
| KRH46297 | Soybean | nucleus | 60.4 | 63.05 |
| KRG98573 | Soybean | nucleus | 60.0 | 62.63 |
| Solyc10g006050.2.1 | Tomato | nucleus | 54.2 | 62.59 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 57.8 | 62.42 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 57.8 | 62.42 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 57.4 | 61.99 |
| TraesCSU01G068500.1 | Wheat | nucleus | 57.4 | 61.99 |
| Os11t0637700-01 | Rice | plasma membrane | 57.6 | 61.67 |
| KRH73860 | Soybean | nucleus | 58.6 | 61.43 |
| PGSC0003DMT400076643 | Potato | nucleus | 57.6 | 60.76 |
| KRH14284 | Soybean | nucleus | 58.0 | 60.67 |
| Solyc12g014600.1.1 | Tomato | nucleus | 52.0 | 59.5 |
| Solyc07g048030.2.1 | Tomato | nucleus | 51.0 | 58.35 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 10.8 | 58.06 |
| Zm00001d019079_P001 | Maize | cytosol | 52.0 | 58.04 |
| PGSC0003DMT400074192 | Potato | nucleus | 55.0 | 58.02 |
| Zm00001d007772_P001 | Maize | nucleus | 51.8 | 57.68 |
| CDX74030 | Canola | nucleus | 54.4 | 57.63 |
| Bra001267.1-P | Field mustard | nucleus | 54.2 | 57.54 |
| EER98147 | Sorghum | nucleus | 52.0 | 57.4 |
| CDY07975 | Canola | nucleus | 54.0 | 57.32 |
| Bra040031.1-P | Field mustard | nucleus | 55.6 | 57.2 |
| CDY22136 | Canola | nucleus | 55.6 | 57.2 |
| EER96020 | Sorghum | nucleus | 52.0 | 57.14 |
| Os07t0584500-01 | Rice | nucleus | 53.6 | 56.78 |
| EER97452 | Sorghum | nucleus | 52.8 | 56.05 |
| PGSC0003DMT400034757 | Potato | nucleus | 52.4 | 55.98 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 52.6 | 55.84 |
| CDY66272 | Canola | nucleus | 54.6 | 55.83 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 52.4 | 55.74 |
| Zm00001d019084_P002 | Maize | nucleus | 50.6 | 55.73 |
| Solyc11g012470.1.1 | Tomato | nucleus | 47.6 | 55.61 |
| AT3G07810.2 | Thale cress | nucleus | 55.0 | 55.56 |
| Solyc12g006180.1.1 | Tomato | nucleus | 48.6 | 55.48 |
| CDY35966 | Canola | nucleus | 54.6 | 55.26 |
| AT4G26650.1 | Thale cress | nucleus | 50.0 | 54.95 |
| Bra029681.1-P | Field mustard | nucleus | 55.0 | 54.89 |
| GSMUA_Achr10P... | Banana | nucleus | 26.8 | 54.03 |
| Zm00001d006704_P002 | Maize | nucleus | 52.2 | 53.93 |
| PGSC0003DMT400060554 | Potato | nucleus | 50.4 | 53.62 |
| Bra028973.1-P | Field mustard | nucleus | 46.2 | 53.35 |
| CDX92807 | Canola | nucleus | 48.0 | 53.33 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 72.4 | 53.31 |
| CDY11989 | Canola | nucleus | 46.0 | 53.24 |
| CDX94301 | Canola | nucleus | 46.6 | 52.71 |
| CDY36753 | Canola | nucleus | 45.6 | 52.41 |
| CDX89316 | Canola | endoplasmic reticulum | 46.8 | 52.35 |
| Bra019094.1-P | Field mustard | nucleus | 48.0 | 51.84 |
| CDY46689 | Canola | nucleus | 48.0 | 51.84 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 42.4 | 51.08 |
| Bra024928.1-P | Field mustard | nucleus | 42.8 | 50.95 |
| Bra026413.1-P | Field mustard | nucleus | 43.0 | 50.83 |
| Bra017475.1-P | Field mustard | nucleus | 43.4 | 50.82 |
| CDY41059 | Canola | nucleus | 43.4 | 50.82 |
| CDY46690 | Canola | nucleus | 43.4 | 50.7 |
| CDX77783 | Canola | nucleus | 42.6 | 50.12 |
| TraesCS2A01G190400.1 | Wheat | plastid | 53.2 | 50.09 |
| Zm00001d019086_P001 | Maize | nucleus | 53.0 | 49.81 |
| OQU83904 | Sorghum | nucleus | 43.6 | 48.44 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 52.4 | 48.43 |
| AT5G55550.10 | Thale cress | nucleus | 48.8 | 48.13 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 43.2 | 47.68 |
| CDY50131 | Canola | nucleus | 36.4 | 47.64 |
| Bra021062.1-P | Field mustard | nucleus | 37.0 | 47.19 |
| Bra022145.1-P | Field mustard | nucleus | 43.2 | 46.96 |
| CDY28918 | Canola | mitochondrion | 44.8 | 46.28 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 37.0 | 45.01 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 34.6 | 39.68 |
| CDY25957 | Canola | nucleus | 43.8 | 39.6 |
| CDX75170 | Canola | extracellular | 12.8 | 39.26 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 25.0 | 36.98 |
| GSMUA_AchrUn_... | Banana | cytosol | 24.2 | 36.78 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 24.4 | 35.99 |
| CDY40554 | Canola | nucleus | 45.4 | 34.6 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 15.4 | 33.48 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 22.4 | 33.23 |
| GSMUA_Achr10P... | Banana | nucleus | 22.0 | 33.03 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 9.6 | 32.65 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 24.6 | 32.45 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 25.8 | 31.93 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 11.0 | 30.39 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 8.8 | 29.14 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 20.8 | 28.97 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 18.4 | 27.96 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 23.0 | 26.02 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 8.2 | 25.79 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 8.4 | 23.73 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 11.2 | 21.37 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 10.8 | 20.85 |
| GSMUA_Achr11P... | Banana | nucleus | 11.0 | 20.75 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 15.2 | 20.43 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 11.0 | 20.37 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 10.6 | 20.08 |
| GSMUA_Achr10P... | Banana | nucleus | 10.8 | 19.93 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 9.4 | 19.92 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 13.0 | 19.4 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 11.2 | 19.31 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 10.6 | 19.0 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 14.0 | 18.04 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 8.4 | 17.43 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 14.4 | 16.59 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 15.4 | 16.52 |
| GSMUA_Achr10P... | Banana | nucleus | 6.4 | 13.85 |
| GSMUA_AchrUn_... | Banana | nucleus | 11.4 | 13.29 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 10.4 | 11.76 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 10.2 | 7.65 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P10970_001 | EnsemblPlants:GSMUA_Achr6T10970_001 | EnsemblPlantsGene:GSMUA_Achr6G10970_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:DAZAP1_RRM2 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44291 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002964B5A | UniProt:M0T5Z6 | MapMan:35.1 | : |
Description
Putative RNA-binding protein Musashi homolog 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G10970_001]
Coordinates
chr6:+:7295270..7302307
Molecular Weight (calculated)
53495.3 Da
IEP (calculated)
9.637
GRAVY (calculated)
-0.504
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPPTCITYV KKGSERKRTI RREGEDLGNA SDLSSPPSHL TPALRIEKRM QSDLGKLFIG GISWDTNEDR LREYFRNYGE VVEAVIMKDR TTGRARGFGF
101: IVFADPAVAE RVVMEKHLID GRMVEAKKAV PRDDQQILNR NNSSVHGSPG PGGRTKKIFV GGLPSTLTES DFKKYFDQFG TITDVVVMYD HNTQRPRGFG
201: FITYDSEDAV DRVLFKSFHE LNGKMVEVKR AVPKELSPGP NIRSPSPGYN YGLNRANSFL NGYTQGYNPS LISGYGMRMD GRLGPISARN GFTSFGPGFG
301: MGMNFEPSLI PSFGGNSSFS NNIGYGRGLS PYYSANSTRY SSPIGYGGGS ANASSGFSSV TRNAWSFGNS TINWGSATPI SAQVGGGTSS YTSGNLNFGG
401: GDNNFDLGGG SFGRSTGPSV VKTSLSPSSG GFEGSYAELY GGSSVYGDPT WRSSSSELGG TGSFGYGLGT VPSDIIGKGS AGYVGDYNAT NRQPNRGIAT
101: IVFADPAVAE RVVMEKHLID GRMVEAKKAV PRDDQQILNR NNSSVHGSPG PGGRTKKIFV GGLPSTLTES DFKKYFDQFG TITDVVVMYD HNTQRPRGFG
201: FITYDSEDAV DRVLFKSFHE LNGKMVEVKR AVPKELSPGP NIRSPSPGYN YGLNRANSFL NGYTQGYNPS LISGYGMRMD GRLGPISARN GFTSFGPGFG
301: MGMNFEPSLI PSFGGNSSFS NNIGYGRGLS PYYSANSTRY SSPIGYGGGS ANASSGFSSV TRNAWSFGNS TINWGSATPI SAQVGGGTSS YTSGNLNFGG
401: GDNNFDLGGG SFGRSTGPSV VKTSLSPSSG GFEGSYAELY GGSSVYGDPT WRSSSSELGG TGSFGYGLGT VPSDIIGKGS AGYVGDYNAT NRQPNRGIAT
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.