Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P13480_001 | Banana | nucleus | 83.48 | 82.49 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 53.75 | 61.3 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 15.02 | 53.76 |
| Zm00001d016349_P002 | Maize | nucleus | 61.56 | 53.39 |
| EES06526 | Sorghum | nucleus | 62.16 | 52.94 |
| Os02t0221500-01 | Rice | nucleus | 62.46 | 52.39 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 59.46 | 52.38 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 63.06 | 52.37 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 64.56 | 52.06 |
| EER88542 | Sorghum | nucleus | 64.56 | 51.93 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 62.16 | 51.88 |
| Zm00001d046190_P001 | Maize | extracellular | 63.96 | 50.96 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 62.46 | 50.86 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 62.76 | 50.61 |
| Solyc03g121710.2.1 | Tomato | nucleus | 40.84 | 50.56 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 62.46 | 50.24 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 61.26 | 45.95 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 31.23 | 45.22 |
| HORVU6Hr1G040220.5 | Barley | plastid | 62.46 | 44.83 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 47.15 | 44.48 |
| GSMUA_AchrUn_... | Banana | cytosol | 43.84 | 44.38 |
| PGSC0003DMT400006638 | Potato | nucleus | 50.75 | 43.78 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 44.14 | 43.49 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 44.14 | 43.36 |
| KRH23293 | Soybean | nucleus | 45.05 | 42.49 |
| CDY48318 | Canola | nucleus | 46.25 | 41.4 |
| CDY26229 | Canola | nucleus | 45.95 | 41.24 |
| AT1G17640.1 | Thale cress | nucleus | 45.05 | 40.65 |
| Solyc06g062740.1.1 | Tomato | cytosol | 23.72 | 40.1 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 44.14 | 38.79 |
| GSMUA_Achr10P... | Banana | nucleus | 28.83 | 38.71 |
| Zm00001d053572_P002 | Maize | cytosol | 60.96 | 36.98 |
| PGSC0003DMT400012372 | Potato | nucleus | 30.03 | 33.67 |
| PGSC0003DMT400012369 | Potato | nucleus | 36.64 | 27.92 |
| Solyc06g062730.1.1 | Tomato | nucleus | 30.03 | 27.25 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 12.31 | 27.15 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 14.11 | 25.97 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 33.63 | 25.69 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 32.73 | 24.66 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 10.81 | 24.49 |
| GSMUA_Achr10P... | Banana | nucleus | 33.33 | 24.13 |
| GSMUA_Achr10P... | Banana | nucleus | 31.83 | 24.09 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 25.23 | 23.4 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 18.32 | 22.59 |
| GSMUA_Achr10P... | Banana | nucleus | 18.32 | 22.51 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 22.22 | 22.49 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 17.42 | 22.14 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 11.71 | 22.03 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 10.51 | 22.01 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 33.03 | 22.0 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 16.82 | 21.62 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 24.62 | 20.3 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 20.12 | 20.0 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 25.53 | 19.23 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 16.22 | 18.62 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 15.32 | 18.28 |
| GSMUA_Achr11P... | Banana | nucleus | 14.41 | 18.11 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 20.12 | 18.01 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 12.61 | 17.8 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 13.81 | 17.42 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 19.52 | 16.75 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 12.01 | 16.6 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 32.43 | 15.91 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 21.32 | 15.24 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 18.32 | 14.06 |
| GSMUA_Achr10P... | Banana | nucleus | 9.61 | 13.85 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 17.12 | 12.9 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.22 | 12.59 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 15.92 | 7.95 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P21250_001 | EnsemblPlants:GSMUA_Achr10T21250_001 | EnsemblPlantsGene:GSMUA_Achr10G21250_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR45276 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002952D34 | UniProt:M0RK50 | MapMan:35.1 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G21250_001]
Coordinates
chr10:-:26941892..26945873
Molecular Weight (calculated)
35513.7 Da
IEP (calculated)
6.596
GRAVY (calculated)
-0.882
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGGGGRGG DGGGGEGDED GDGSAESKGK RKDNSGGEEM RQADAGSSSA GKIFVGGVAW DTTEDTFNKH FSKYGEIIDS VIMKDKNTHM PRGFGFVTFA
101: DPSVIDRVWE DEHVIDGRTV EVKRTVPRED MPSKAGIKTK KIFVGGIPTA LTEDELKEHF SSYGEVIEHQ IMLDHSTRRS RGFGFVTFKD EEAVDKIISE
201: GRMHDLAGKQ VEIKKAEPKR SGGSSRMNER VSHGGSNRSA RGYRGNSYGY GSDHPYGDAY YGGGSGYGYG RGYSYGGVPG YGAAYGSNYG GPMYGVGGYG
301: GDMYGGPGGY GGWYDGGHGS GRGYENRYHP YGK
101: DPSVIDRVWE DEHVIDGRTV EVKRTVPRED MPSKAGIKTK KIFVGGIPTA LTEDELKEHF SSYGEVIEHQ IMLDHSTRRS RGFGFVTFKD EEAVDKIISE
201: GRMHDLAGKQ VEIKKAEPKR SGGSSRMNER VSHGGSNRSA RGYRGNSYGY GSDHPYGDAY YGGGSGYGYG RGYSYGGVPG YGAAYGSNYG GPMYGVGGYG
301: GDMYGGPGGY GGWYDGGHGS GRGYENRYHP YGK
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.