Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G360900.1 | Wheat | nucleus | 86.99 | 63.34 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 85.96 | 62.91 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 80.14 | 61.9 |
| EER88542 | Sorghum | nucleus | 87.67 | 61.84 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 86.99 | 61.5 |
| Zm00001d046190_P001 | Maize | extracellular | 85.62 | 59.81 |
| Os02t0221500-01 | Rice | nucleus | 80.48 | 59.19 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 85.62 | 56.31 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 63.7 | 55.19 |
| GSMUA_Achr10P... | Banana | nucleus | 61.3 | 53.75 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 53.08 | 43.91 |
| Solyc03g121710.2.1 | Tomato | nucleus | 40.41 | 43.87 |
| PGSC0003DMT400006638 | Potato | nucleus | 54.79 | 41.45 |
| Os08t0320100-01 | Rice | nucleus | 47.6 | 39.71 |
| KRH23293 | Soybean | nucleus | 47.26 | 39.09 |
| AT1G17640.1 | Thale cress | nucleus | 49.32 | 39.02 |
| CDY48318 | Canola | nucleus | 48.97 | 38.44 |
| CDY26229 | Canola | nucleus | 48.29 | 38.01 |
| Solyc06g062740.1.1 | Tomato | cytosol | 23.97 | 35.53 |
| PGSC0003DMT400012372 | Potato | nucleus | 34.59 | 34.01 |
| PGSC0003DMT400012369 | Potato | nucleus | 45.55 | 30.43 |
| Solyc06g062730.1.1 | Tomato | nucleus | 36.99 | 29.43 |
| Os05t0376000-00 | Rice | cytosol | 19.86 | 27.75 |
| Os01t0945800-01 | Rice | nucleus | 31.85 | 25.62 |
| Os11t0637700-01 | Rice | plasma membrane | 35.62 | 22.27 |
| Os07t0584500-01 | Rice | nucleus | 35.96 | 22.25 |
| Os07t0124600-01 | Rice | nucleus | 28.42 | 22.02 |
| Os08t0492100-02 | Rice | nucleus | 31.85 | 21.33 |
| Os01t0614500-01 | Rice | nucleus | 24.66 | 16.11 |
| Os01t0876800-00 | Rice | nucleus | 15.07 | 14.67 |
| Os02t0714000-01 | Rice | nucleus, plastid | 14.04 | 14.29 |
| Os02t0755400-01 | Rice | plastid | 8.56 | 14.2 |
| Os01t0265800-01 | Rice | nucleus | 23.63 | 14.08 |
| Os01t0958500-01 | Rice | nucleus | 14.38 | 13.55 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 12.67 | 13.45 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 12.33 | 11.61 |
| Os04t0636900-02 | Rice | nucleus | 18.49 | 10.49 |
| Os02t0602600-00 | Rice | nucleus | 13.7 | 10.36 |
| Os06t0220600-01 | Rice | plastid | 11.64 | 9.91 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A0P0WY24 | ProteinID:BAS98282.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | InterPro:Hrp1_RRM2 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os06g0566100 | EnsemblPlants:Os06t0566100-01 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45276 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000E12865 | SEG:seg |
Description
RNA recognition motif domain domain containing protein. (Os06t0566100-01)
Coordinates
chr6:+:21820173..21822445
Molecular Weight (calculated)
29812.3 Da
IEP (calculated)
9.644
GRAVY (calculated)
-0.706
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: AISDSVIMKD KHTKMPRGFG FVTFSDPSVI DKVLQDEHTI DGRTVEVKRT VPREEMSSKD GPKTRKIFVG GIPPSLTEDK LKEHFSSYGK VVEHQIMLDH
101: GTGRSRGFGF VTFENEDAVE RVMSEGRMHD LAGKQVEIKK AEPKKPGGGD SSSNGRHSHG SGGGHRSSYR GSGGGNSGSS SSGGYGGYGG GYRSAAAAYY
201: GSTGYAGYGR GYGYGGNPAF GSGFGSGYGG SMYGGPYGAY GAYGGAYGGG GAYGAPGGYG AGGYGAYGGA GGMGGGGSTS GRGSSRYHPY GK
101: GTGRSRGFGF VTFENEDAVE RVMSEGRMHD LAGKQVEIKK AEPKKPGGGD SSSNGRHSHG SGGGHRSSYR GSGGGNSGSS SSGGYGGYGG GYRSAAAAYY
201: GSTGYAGYGR GYGYGGNPAF GSGFGSGYGG SMYGGPYGAY GAYGGAYGGG GAYGAPGGYG AGGYGAYGGA GGMGGGGSTS GRGSSRYHPY GK
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.