Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012372 | Potato | nucleus | 48.97 | 72.05 |
| Solyc06g062740.1.1 | Tomato | cytosol | 29.29 | 64.97 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 30.43 | 45.55 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 34.1 | 42.21 |
| KRH23293 | Soybean | nucleus | 32.95 | 40.79 |
| PGSC0003DMT400006638 | Potato | nucleus | 35.93 | 40.67 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 30.21 | 39.17 |
| PGSC0003DMT400044868 | Potato | nucleus | 30.43 | 38.89 |
| AT1G17640.1 | Thale cress | nucleus | 32.04 | 37.94 |
| Os02t0221500-01 | Rice | nucleus | 34.32 | 37.78 |
| CDY26229 | Canola | nucleus | 31.81 | 37.47 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 34.32 | 37.41 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 32.27 | 37.3 |
| CDY48318 | Canola | nucleus | 31.58 | 37.1 |
| EES06526 | Sorghum | nucleus | 32.95 | 36.83 |
| GSMUA_Achr10P... | Banana | nucleus | 27.92 | 36.64 |
| EER88542 | Sorghum | nucleus | 34.1 | 35.99 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 33.87 | 35.84 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 33.41 | 35.7 |
| Zm00001d016349_P002 | Maize | nucleus | 31.35 | 35.68 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 32.49 | 35.59 |
| Zm00001d046190_P001 | Maize | extracellular | 33.87 | 35.41 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 33.41 | 35.27 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 33.18 | 35.11 |
| PGSC0003DMT400032811 | Potato | nucleus | 30.21 | 33.93 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 33.64 | 33.11 |
| HORVU6Hr1G040220.5 | Barley | plastid | 33.41 | 31.47 |
| PGSC0003DMT400035000 | Potato | nucleus | 30.43 | 30.09 |
| PGSC0003DMT400044195 | Potato | nucleus | 32.27 | 29.68 |
| PGSC0003DMT400009762 | Potato | nucleus | 26.32 | 28.97 |
| PGSC0003DMT400012586 | Potato | nucleus | 21.74 | 27.62 |
| PGSC0003DMT400034757 | Potato | nucleus | 28.6 | 26.71 |
| PGSC0003DMT400074192 | Potato | nucleus | 28.6 | 26.37 |
| Zm00001d053572_P002 | Maize | cytosol | 32.27 | 25.68 |
| PGSC0003DMT400060554 | Potato | nucleus | 27.46 | 25.53 |
| PGSC0003DMT400037271 | Potato | nucleus | 27.0 | 25.11 |
| PGSC0003DMT400044866 | Potato | extracellular | 30.43 | 24.91 |
| PGSC0003DMT400076643 | Potato | nucleus | 26.32 | 24.26 |
| PGSC0003DMT400010280 | Potato | cytosol | 19.91 | 23.45 |
| PGSC0003DMT400008944 | Potato | nucleus | 13.04 | 21.59 |
| PGSC0003DMT400031324 | Potato | cytosol | 6.86 | 21.58 |
| PGSC0003DMT400025900 | Potato | nucleus | 13.96 | 21.25 |
| PGSC0003DMT400008213 | Potato | nucleus | 20.59 | 21.23 |
| PGSC0003DMT400032256 | Potato | nucleus | 14.19 | 19.87 |
| PGSC0003DMT400039802 | Potato | nucleus | 19.68 | 19.28 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 12.13 | 18.79 |
| PGSC0003DMT400027411 | Potato | nucleus | 10.07 | 17.32 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 13.73 | 16.48 |
| PGSC0003DMT400058431 | Potato | nucleus | 17.85 | 15.92 |
| PGSC0003DMT400072501 | Potato | nucleus | 14.19 | 15.05 |
| PGSC0003DMT400016249 | Potato | nucleus | 16.93 | 15.04 |
| PGSC0003DMT400008583 | Potato | nucleus | 19.91 | 14.55 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400012369 | EnsemblPlantsGene:PGSC0003DMG400004848 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PFAM:PF00076 | PFscan:PS50102 | PGSC:PGSC0003DMG400004848 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0002968F0B | UniProt:M1A155 | MapMan:35.1 | : | : | : |
Description
Heterogeneous nuclear ribonucleoprotein A1 [Source:PGSC_GENE;Acc:PGSC0003DMG400004848]
Coordinates
chr6:-:48674117..48676801
Molecular Weight (calculated)
45427.5 Da
IEP (calculated)
5.054
GRAVY (calculated)
-0.686
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDEEQNGE TDQPNEDVEM ADKVGDREAH ELKPSINGCS VRKLFVGGIS WMTTKESLRE YFSRFGEVAD SVVMYQKISG MPLGFGFVTY ADTEIADKVL
101: KENHIIDDRK VDVKIPVTYR QRIFVGGLPL SLTEGELKEY FSSYGNVVGH QIILDKTTGR SQRFGIVSFD KEEAVEKVLS NGHIHELRGK QVEIKRAKSK
201: RDCAEHTSES QIHHGGSGSK SYYGDGGSLE AFGGGYGGNM GSGYGVYEGY GDYGGYGKFA GSYGVSPTGF YSGYGYGFWF GEAMYGAAGY EGSTYGIPAY
301: YGGGSGYGNR GNGSNDGGNG GYGGGGGNGA YAYGNAGAAN GRFVPAYYGG GSGYGNSGNG SNDGGNRGYG GGGGNGANAY GNAGADNGRS VPAYYGGGSD
401: DGSRGNGSND GCNGGYGGGG ENGATGADNG RSHPSLK
101: KENHIIDDRK VDVKIPVTYR QRIFVGGLPL SLTEGELKEY FSSYGNVVGH QIILDKTTGR SQRFGIVSFD KEEAVEKVLS NGHIHELRGK QVEIKRAKSK
201: RDCAEHTSES QIHHGGSGSK SYYGDGGSLE AFGGGYGGNM GSGYGVYEGY GDYGGYGKFA GSYGVSPTGF YSGYGYGFWF GEAMYGAAGY EGSTYGIPAY
301: YGGGSGYGNR GNGSNDGGNG GYGGGGGNGA YAYGNAGAAN GRFVPAYYGG GSGYGNSGNG SNDGGNRGYG GGGGNGANAY GNAGADNGRS VPAYYGGGSD
401: DGSRGNGSND GCNGGYGGGG ENGATGADNG RSHPSLK
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.