Factsheet for PGSC0003DMT400016249

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400016249

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22090.2	PGSC0003DMT400016249	AT2G22090.2	12024044

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g011560.2.1	Tomato	nucleus	83.74	87.66
VIT_07s0031g01290.t01	Wine grape	nucleus	39.23	49.23
CDY13782	Canola	nucleus	25.2	40.39
Bra031230.1-P	Field mustard	nucleus	25.2	40.39
CDX76950	Canola	nucleus	25.0	39.94
AT2G22090.2	Thale cress	nucleus	26.83	38.04
PGSC0003DMT400072501	Potato	nucleus	29.27	34.95
PGSC0003DMT400032256	Potato	nucleus	19.92	31.41
PGSC0003DMT400039802	Potato	nucleus	27.64	30.49
PGSC0003DMT400058431	Potato	nucleus	30.28	30.41
PGSC0003DMT400008213	Potato	nucleus	25.61	29.72
Bra030265.1-P	Field mustard	nucleus	18.5	24.86
PGSC0003DMT400031418	Potato	extracellular, golgi	18.29	24.73
CDY15850	Canola	nucleus	18.5	24.59
PGSC0003DMT400031324	Potato	cytosol	6.91	24.46
PGSC0003DMT400044868	Potato	nucleus	16.26	23.39
AT2G22100.1	Thale cress	nucleus	17.89	23.04
PGSC0003DMT400025900	Potato	nucleus	12.4	21.25
PGSC0003DMT400012372	Potato	nucleus	12.8	21.21
PGSC0003DMT400035478	Potato	nucleus, plastid	11.79	20.57
PGSC0003DMT400008944	Potato	nucleus	10.98	20.45
PGSC0003DMT400027411	Potato	nucleus	9.96	19.29
PGSC0003DMT400032811	Potato	nucleus	14.63	18.51
PGSC0003DMT400012586	Potato	nucleus	12.8	18.31
PGSC0003DMT400006638	Potato	nucleus	13.41	17.1
PGSC0003DMT400012369	Potato	nucleus	15.04	16.93
PGSC0003DMT400074192	Potato	nucleus	15.85	16.46
PGSC0003DMT400010280	Potato	cytosol	12.4	16.44
PGSC0003DMT400037271	Potato	nucleus	15.24	15.96
PGSC0003DMT400044195	Potato	nucleus	15.04	15.58
PGSC0003DMT400035000	Potato	nucleus	13.62	15.16
PGSC0003DMT400009762	Potato	nucleus	11.99	14.86
PGSC0003DMT400044866	Potato	extracellular	16.06	14.79
PGSC0003DMT400076643	Potato	nucleus	14.02	14.56
PGSC0003DMT400060554	Potato	nucleus	13.62	14.26
PGSC0003DMT400034757	Potato	nucleus	13.21	13.89
AT2G19380.1	Thale cress	nucleus	17.07	13.7
PGSC0003DMT400008583	Potato	nucleus	9.55	7.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400016249	EnsemblPlantsGene:PGSC0003DMG400006349	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44578	PANTHER:PTHR44578:SF5	PFAM:PF00076	PFscan:PS50102	PGSC:PGSC0003DMG400006349	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000294FFB8	UniProt:M1A7C7	MapMan:35.1	:

Description

RNA-binding protein AKIP1 [Source:PGSC_GENE;Acc:PGSC0003DMG400006349]

Coordinates

chr4:-:7262109..7266071

Molecular Weight (calculated)

50974.8 Da

IEP (calculated)

9.933

GRAVY (calculated)

-0.279

Length

492 amino acids

Sequence
(BLAST)

001: MAANNEVKKR KLVKKAPDSI ATPSKINKNQ PQQQQKTPKS NFSNPPNSDS DSDSDSDPLP VKIQKLLEPF SKDQLVSLAV DTAAALPAFY ELIQSNADKD
101: ISHRKIFVYG LARETTRPAL LSVFEPYGEI EECNVVMDHA TGKAKGYAFV LFKTRKSAAK ALKEPQKMIN NRLASCKLAS MKETAVSGTN EFGNRKIYVS
201: NVPKDVNSEK LRSFFAKFGE IESGPMGFDP STGKSKGYAL FVYKTVEAAK KCLEKPSKIF EGRQLHCKKA AEGKVGGGAA SITTEVVQQS LLAMPPGQGV
301: YAPVAAGHSM GMLGQNADVP MMNPFYGGVL ANPYGAYGNP FVGVGGFGQQ MGGGMGIAAG YGGRLDGLGG GVSGLGAYGG AGSSTGGSTG GLGAYGGVGG
401: STGGSTGGLA AYGGVGSRTG AYGGVGGSTG GSTGGVVPGL LQLYKQVGQP SSAKHPGSSG YPSHFSRSKV PHFFLNFLVS ECPTLLLKMN NA

Best Arabidopsis Sequence Match ( AT2G41060.1 )
(BLAST)

001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R

Arabidopsis Description

UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.