Factsheet for VIT_07s0031g01290.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g01290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22090.2	VIT_07s0031g01290.t01	AT2G22090.2	12024044

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g011560.2.1	Tomato	nucleus	47.7	39.79
PGSC0003DMT400016249	Potato	nucleus	49.23	39.23
CDX76950	Canola	nucleus	30.61	38.96
Bra031230.1-P	Field mustard	nucleus	29.59	37.78
CDY13782	Canola	nucleus	29.59	37.78
AT2G22090.2	Thale cress	nucleus	31.89	36.02
VIT_08s0056g00690.t01	Wine grape	nucleus	38.27	32.4
VIT_19s0014g01570.t01	Wine grape	nucleus	34.69	30.29
VIT_08s0007g06300.t01	Wine grape	nucleus	26.28	30.12
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	38.78	29.34
VIT_06s0009g01190.t01	Wine grape	nucleus	33.93	29.1
Bra030265.1-P	Field mustard	nucleus	22.96	24.59
CDY15850	Canola	nucleus	22.96	24.32
AT2G22100.1	Thale cress	nucleus	22.19	22.77
VIT_12s0057g01280.t01	Wine grape	nucleus	14.54	22.09
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	14.29	19.65
VIT_13s0019g03610.t01	Wine grape	nucleus	11.99	19.03
VIT_18s0117g00150.t01	Wine grape	nucleus	17.35	18.94
VIT_19s0015g00920.t01	Wine grape	nucleus	16.58	18.68
VIT_18s0001g05840.t01	Wine grape	nucleus	13.01	18.48
VIT_15s0048g02630.t01	Wine grape	nucleus	12.5	18.35
VIT_18s0089g00920.t01	Wine grape	nucleus	11.99	17.47
VIT_14s0066g00480.t01	Wine grape	nucleus	16.58	17.29
VIT_07s0031g00600.t01	Wine grape	cytosol	14.8	16.16
VIT_09s0002g02350.t01	Wine grape	cytosol	14.54	16.15
VIT_12s0057g00480.t01	Wine grape	nucleus	16.33	13.39
VIT_07s0005g03980.t01	Wine grape	nucleus	14.8	13.36
AT2G19380.1	Thale cress	nucleus	20.41	13.05
VIT_19s0090g01660.t01	Wine grape	nucleus	15.31	12.55
VIT_05s0049g01660.t01	Wine grape	nucleus	14.54	12.28
VIT_16s0098g01050.t01	Wine grape	endoplasmic reticulum, extracellular	6.63	8.93
VIT_18s0001g08640.t01	Wine grape	nucleus	10.71	8.92

Protein Annotations

EntrezGene:100266260	wikigene:100266260	Gene3D:3.30.70.330	MapMan:35.1	EMBL:AM463492	ProteinID:CAN83373
ProteinID:CAN83373.1	ProteinID:CCB47105	ProteinID:CCB47105.1	UniProt:F6H4P1	EMBL:FN595233	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100266260
wikigene:LOC100266260	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44578	PANTHER:PTHR44578:SF5
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002108FEA	ArrayExpress:VIT_07s0031g01290
EnsemblPlantsGene:VIT_07s0031g01290	EnsemblPlants:VIT_07s0031g01290.t01	RefSeq:XP_002276585	RefSeq:XP_002276585.1	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:17383387..17389583

Molecular Weight (calculated)

42552.8 Da

IEP (calculated)

10.150

GRAVY (calculated)

-0.469

Length

392 amino acids

Sequence
(BLAST)

001: MAKTKKSKKQ KLTKKTPKKI EKKLKSKKVE KALATKPSDS DSDSDSGFDK LQKLLEPYSK DQLIGFISDA AASDSSLFQR IRETADRDVS HRKIFVHGLG
101: WDTTRETLLA AFEPYGQIED CNVVTDRNTG KAKGYGFVLF KTRQGAVKAL KQPGKKINNR MTQSQLASMG PSPPPQSQDT VGRKIYVSNV QADVDPERLR
201: SFFAKFGEIE TGPIGFDTQT GKSRGFALFV YKNQESARKA LEDPYRIFEG HQLHCQKATE GKNKVPAQPQ PQLAAVAATQ NFMLSQHPTL NTLYSGLLAH
301: PNASMIGAAA VNPAVAGAMN PGVISSSQVG SVIGSVEGLG GYGTHGVAGF GGTPSVLGPP SLGLQHAYPS TQLGDWCWDF RWLPVVYVMK CS

Best Arabidopsis Sequence Match ( AT2G41060.2 )
(BLAST)

001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R

Arabidopsis Description

UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.