Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH47819 | Soybean | nucleus | 73.41 | 66.22 |
| KRH06384 | Soybean | nucleus | 73.78 | 65.45 |
| KRH06373 | Soybean | nucleus | 66.29 | 63.9 |
| KRH47808 | Soybean | nucleus | 65.54 | 61.19 |
| CDY41556 | Canola | nucleus | 55.43 | 51.03 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 49.44 | 49.07 |
| Bra004508.1-P | Field mustard | nucleus | 56.93 | 48.72 |
| CDY41557 | Canola | nucleus | 57.3 | 48.42 |
| CDX80046 | Canola | nucleus | 56.93 | 48.1 |
| Bra040485.1-P | Field mustard | nucleus | 57.3 | 46.93 |
| CDY48016 | Canola | nucleus | 57.3 | 46.93 |
| CDY27523 | Canola | nucleus | 56.55 | 46.75 |
| AT2G46780.1 | Thale cress | nucleus | 57.3 | 45.54 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 43.82 | 41.05 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 35.96 | 38.87 |
| VIT_16s0098g01050.t01 | Wine grape | endoplasmic reticulum, extracellular | 40.07 | 36.77 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 35.96 | 34.78 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 17.23 | 17.83 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 20.6 | 15.58 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 19.85 | 15.23 |
| VIT_08s0007g06300.t01 | Wine grape | nucleus | 19.48 | 15.2 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 25.09 | 14.92 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 19.85 | 14.76 |
| VIT_07s0005g03980.t01 | Wine grape | nucleus | 22.1 | 13.59 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 23.6 | 13.58 |
| VIT_14s0066g00480.t01 | Wine grape | nucleus | 18.73 | 13.3 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 22.47 | 12.55 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 16.85 | 12.53 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 18.35 | 12.5 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 21.35 | 12.31 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 21.35 | 11.92 |
| VIT_06s0009g01190.t01 | Wine grape | nucleus | 20.22 | 11.82 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 19.48 | 10.04 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 15.36 | 8.7 |
Protein Annotations
| EntrezGene:100257521 | wikigene:100257521 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:CBI38707 | ProteinID:CBI38707.3 |
| UniProt:D7U825 | EMBL:FN596739 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100257521 | wikigene:LOC100257521 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0001BE4E89 | ArrayExpress:VIT_15s0048g02630 | EnsemblPlantsGene:VIT_15s0048g02630 | EnsemblPlants:VIT_15s0048g02630.t01 | RefSeq:XP_002267504 |
| RefSeq:XP_002267504.2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr15:-:16765810..16768433
Molecular Weight (calculated)
28610.9 Da
IEP (calculated)
8.509
GRAVY (calculated)
-0.506
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGGTNAGQF NDTTYTKIFV GGLAWETQRD TMRRYFEQFG EIQEAVVITD KNTGRSKGYG FVTFKDPDAA MRACQNPSPV IDGRRANCNL ASLGAHKTRP
101: PTPQHGAGRF RPAPGLVAPP AYHGSSSTYF HQPTSQYAFP YSTYGYTGYS QDSMYPMNFY SVYGGQQFSP YYTTGATGPP GIFHNFYPYY AQYAQSSQGN
201: GFGVQYPQVM QYPYLPQHYS SAGILSLPPV AGAATSTAGV TATAGAAGTG ASASQTAGTT SEQDSST
101: PTPQHGAGRF RPAPGLVAPP AYHGSSSTYF HQPTSQYAFP YSTYGYTGYS QDSMYPMNFY SVYGGQQFSP YYTTGATGPP GIFHNFYPYY AQYAQSSQGN
201: GFGVQYPQVM QYPYLPQHYS SAGILSLPPV AGAATSTAGV TATAGAAGTG ASASQTAGTT SEQDSST
001: MAQQRQFQME GGNNNTTDTK LTKIFVGGLA WETQRDTMRR YFEQFGEIVE AVVITDKNTG RSKGYGFVTF KEAEAAMRAC QNMNPVIDGR RANCNLACLG
101: AQKPRPPTSP RHGTGRFRSP GSGVGLVAPS PQFRGSSSSS AFVHQQQQQH TAQFPFPYST YGFSGYSQEG MYPMNYYNHH LYGGQQFSPY MGHPSAGSTG
201: MFHGFYPYYP QYNAAQSSNQ AQAQVQAQHH QGFSFQYTAP PAPPLLQYPY LPHQPHFSSQ QQFSSQQPPP PILSLPTSLA LSLPSSSSPS SSTSTSAATT
301: ATKTVVITTA TKKAETEASS KDGNEAMTTS TIKIEG
101: AQKPRPPTSP RHGTGRFRSP GSGVGLVAPS PQFRGSSSSS AFVHQQQQQH TAQFPFPYST YGFSGYSQEG MYPMNYYNHH LYGGQQFSPY MGHPSAGSTG
201: MFHGFYPYYP QYNAAQSSNQ AQAQVQAQHH QGFSFQYTAP PAPPLLQYPY LPHQPHFSSQ QQFSSQQPPP PILSLPTSLA LSLPSSSSPS SSTSTSAATT
301: ATKTVVITTA TKKAETEASS KDGNEAMTTS TIKIEG
Arabidopsis Description
At2g46780 [Source:UniProtKB/TrEMBL;Acc:Q501B0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.