Factsheet for VIT_18s0089g00920.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0040g00890.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33470.1	VIT_08s0040g00890.t01	AT3G56680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23771	Soybean	nucleus	86.25	85.29
KRH13261	Soybean	cytosol	39.03	84.68
KRH75298	Soybean	cytosol, nucleus	30.86	83.84
KRH40033	Soybean	nucleus	84.76	83.82
PGSC0003DMT400008944	Potato	nucleus	75.84	77.27
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	73.61	75.86
GSMUA_Achr10P...	Banana	nucleus	72.12	71.59
EES01849	Sorghum	nucleus	67.66	69.47
GSMUA_Achr3P21850_001	Banana	nucleus	66.91	68.7
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	68.77	68.52
GSMUA_Achr8P08440_001	Banana	nucleus	63.94	66.41
Zm00001d042641_P001	Maize	nucleus	69.52	63.39
Os01t0876800-00	Rice	nucleus	70.26	63.0
TraesCS3D01G380100.1	Wheat	nucleus	68.03	61.82
TraesCS3B01G419200.1	Wheat	nucleus	67.66	61.49
TraesCS3A01G389600.1	Wheat	nucleus	67.29	60.94
CDY69197	Canola	nucleus	47.21	56.44
CDY04769	Canola	nucleus	47.58	54.01
Bra024547.1-P	Field mustard	nucleus	47.96	53.97
Zm00001d012238_P003	Maize	nucleus, plasma membrane, plastid	67.29	53.24
CDX73279	Canola	cytosol	46.1	51.24
Bra012350.1-P	Field mustard	nucleus	47.21	51.0
CDY25759	Canola	nucleus	46.84	50.6
AT1G33470.1	Thale cress	cytosol	45.72	50.2
VIT_15s0048g02630.t01	Wine grape	nucleus	49.07	49.44
KRH62942	Soybean	mitochondrion	36.8	48.53
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	45.35	42.81
Os01t0958500-01	Rice	nucleus	48.33	41.94
TraesCS3A01G499100.1	Wheat	cytosol, nucleus, plastid	47.21	40.71
Bra010203.1-P	Field mustard	nucleus	46.1	40.66
HORVU3Hr1G110370.1	Barley	cytosol, mitochondrion, nucleus	47.21	40.58
VIT_13s0019g03610.t01	Wine grape	nucleus	37.17	40.49
TraesCS3B01G562300.3	Wheat	mitochondrion	46.47	40.06
TraesCS3D01G505900.1	Wheat	mitochondrion	46.84	39.87
AT1G22910.3	Thale cress	nucleus	51.3	39.77
CDY67263	Canola	nucleus	47.96	39.33
EES02078	Sorghum	nucleus	48.7	38.76
Zm00001d042042_P001	Maize	nucleus	46.84	37.06
VIT_18s0001g05840.t01	Wine grape	nucleus	37.92	36.96
CDY13339	Canola	mitochondrion	21.19	33.93
CDY21399	Canola	mitochondrion	17.84	33.1
VIT_16s0098g01050.t01	Wine grape	endoplasmic reticulum, extracellular	31.97	29.55
GSMUA_Achr6P24180_001	Banana	cytosol	59.85	24.14
VIT_09s0002g02350.t01	Wine grape	cytosol	23.79	18.13
VIT_12s0057g01280.t01	Wine grape	nucleus	17.1	17.83
VIT_18s0117g00150.t01	Wine grape	nucleus	22.68	16.99
VIT_19s0015g00920.t01	Wine grape	nucleus	21.93	16.95
VIT_08s0007g06300.t01	Wine grape	nucleus	20.07	15.79
VIT_07s0005g03980.t01	Wine grape	nucleus	25.28	15.67
VIT_05s0049g01660.t01	Wine grape	nucleus	26.77	15.52
VIT_14s0066g00480.t01	Wine grape	nucleus	21.19	15.16
VIT_19s0014g01570.t01	Wine grape	nucleus	24.54	14.7
VIT_19s0090g01660.t01	Wine grape	nucleus	26.02	14.64
VIT_12s0057g00480.t01	Wine grape	nucleus	25.65	14.44
VIT_07s0031g00600.t01	Wine grape	cytosol	17.84	13.37
VIT_06s0009g01190.t01	Wine grape	nucleus	21.56	12.69
VIT_07s0031g01290.t01	Wine grape	nucleus	17.47	11.99
VIT_08s0056g00690.t01	Wine grape	nucleus	19.33	11.23
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	20.07	10.42
VIT_18s0001g08640.t01	Wine grape	nucleus	16.36	9.34

Protein Annotations

EntrezGene:100241327	wikigene:100241327	Gene3D:3.30.70.330	MapMan:35.1	EMBL:AM434267	ProteinID:CAN73746
ProteinID:CAN73746.1	ProteinID:CCB44119	ProteinID:CCB44119.1	UniProt:F6GVY4	EMBL:FN594956	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100241327
wikigene:LOC100241327	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44374	PANTHER:PTHR44374:SF4
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC57782	UniParc:UPI00021091E2
ArrayExpress:VIT_18s0089g00920	EnsemblPlantsGene:VIT_18s0089g00920	EnsemblPlants:VIT_18s0089g00920.t01	unigene:Vvi.983	RefSeq:XP_002266779	RefSeq:XP_002266779.1
RefSeq:XP_010644001.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:28763370..28768437

Molecular Weight (calculated)

28409.3 Da

IEP (calculated)

8.993

GRAVY (calculated)

-0.282

Length

269 amino acids

Sequence
(BLAST)

001: MTPANLAGQF GDTTYTKVFV GGLAWETQKE TMKKYFEQFG EILEAVVITD KTTGRSKGYG FVTFREPDAA MRACVDAAPV IDGRRANCNL ASLGVQRSKP
101: STPKHGGGRN FRVMGSFQTG FQGGVGTAFP SAATFPHYAI QQGIPYNLYG YSPYSPDYTY PTSYYSVYGG AAAQYPVYGA GPGGMMTGAG AAFYPYLQFG
201: EGSGGAAASG GYTSGQGYGV QYPHHLVQYS AINSTGGYPQ HYGAPMSLAP TPALQSGVNM ALHAPISNR

Best Arabidopsis Sequence Match ( AT1G33470.2 )
(BLAST)

001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.