Factsheet for VIT_05s0049g01660.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g02830.t01
VIT_07s0141g00280.t01
VIT_09s0018g01880.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33410.1	VIT_09s0018g01880.t01	AT3G21215.1	21798944
AT4G14300.1	VIT_03s0038g02830.t01	AT2G16950.1	14756317
AT4G14300.1	VIT_07s0141g00280.t01	AT5G10270.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34534	Soybean	nucleus	76.72	75.58
KRG92276	Soybean	endoplasmic reticulum	77.16	75.21
VIT_07s0005g03980.t01	Wine grape	nucleus	69.4	74.19
Solyc09g090520.2.1	Tomato	nucleus	73.92	72.21
PGSC0003DMT400044195	Potato	nucleus	73.49	71.79
PGSC0003DMT400035000	Potato	nucleus	67.89	71.27
Solyc03g005680.2.1	Tomato	nucleus	64.66	70.26
AT4G14300.1	Thale cress	nucleus	61.21	69.1
AT2G33410.1	Thale cress	nucleus	59.48	68.32
Bra010757.1-P	Field mustard	nucleus	56.03	68.06
CDX79527	Canola	nucleus	59.48	67.98
Bra021850.1-P	Field mustard	nucleus	53.66	67.85
CDX90262	Canola	nucleus	55.82	67.8
CDY12068	Canola	nucleus	52.16	67.6
CDY37724	Canola	nucleus	46.98	67.49
CDY23739	Canola	nucleus	55.6	67.36
Bra005496.1-P	Field mustard	nucleus	54.09	66.76
CDY67299	Canola	nucleus	54.74	66.67
CDX84689	Canola	nucleus	58.62	66.67
CDY17173	Canola	nucleus	54.09	66.58
Bra022938.1-P	Field mustard	nucleus	58.41	66.42
GSMUA_Achr5P17690_001	Banana	nucleus	54.31	62.38
KRH07772	Soybean	cytosol	13.15	62.24
VIT_12s0057g00480.t01	Wine grape	nucleus	43.53	42.26
VIT_19s0090g01660.t01	Wine grape	nucleus	43.32	42.05
VIT_14s0066g00480.t01	Wine grape	nucleus	30.82	38.03
VIT_12s0057g01280.t01	Wine grape	nucleus	21.12	37.98
VIT_19s0015g00920.t01	Wine grape	nucleus	28.23	37.64
VIT_18s0117g00150.t01	Wine grape	nucleus	28.45	36.77
VIT_09s0002g02350.t01	Wine grape	cytosol	27.8	36.54
VIT_07s0031g00600.t01	Wine grape	cytosol	23.28	30.08
VIT_18s0089g00920.t01	Wine grape	nucleus	15.52	26.77
VIT_18s0001g08640.t01	Wine grape	nucleus	26.51	26.11
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	15.52	25.26
VIT_15s0048g02630.t01	Wine grape	nucleus	13.58	23.6
VIT_18s0001g05840.t01	Wine grape	nucleus	12.72	21.38
VIT_19s0014g01570.t01	Wine grape	nucleus	19.83	20.49
VIT_13s0019g03610.t01	Wine grape	nucleus	10.56	19.84
VIT_08s0007g06300.t01	Wine grape	nucleus	14.44	19.59
VIT_08s0056g00690.t01	Wine grape	nucleus	15.09	15.12
VIT_06s0009g01190.t01	Wine grape	nucleus	14.66	14.88
VIT_07s0031g01290.t01	Wine grape	nucleus	12.28	14.54
VIT_16s0098g01050.t01	Wine grape	endoplasmic reticulum, extracellular	9.05	14.43
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	13.79	12.36

Protein Annotations

EntrezGene:100257917	wikigene:100257917	Gene3D:3.30.70.330	MapMan:35.1	EMBL:AM462388	ProteinID:CAN68016
ProteinID:CAN68016.1	ProteinID:CCB48614	ProteinID:CCB48614.1	InterPro:DAZAP1_RRM2	UniProt:F6H8S2	EMBL:FN595496
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
EntrezGene:LOC100257917	wikigene:LOC100257917	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC52181	UniParc:UPI0001983540
ArrayExpress:VIT_05s0049g01660	EnsemblPlantsGene:VIT_05s0049g01660	EnsemblPlants:VIT_05s0049g01660.t01	unigene:Vvi.639	RefSeq:XP_002285419	RefSeq:XP_002285419.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:9111201..9114889

Molecular Weight (calculated)

46778.8 Da

IEP (calculated)

8.383

GRAVY (calculated)

-0.721

Length

464 amino acids

Sequence
(BLAST)

001: MDSDQGKLFI GGISWETSED KLKEYFGSYG EVSQAVVMRD KATGRPRGFG FVVFADPSIL DRVLQEKHII DGRTVEAKRA LSREEQQTSS RAGNFNSARN
101: SGGGGNVKTK KIFVGGLPPT LSEEGFRQYF EAFGHVTDVV VMYDQSTQRP RGFGFVSFDT EDAVDRVLYK TFHDLNGKQV EVKRALPKDA NPGGGSRSMG
201: GGAGAVAGGY QGYGASGGNP TTYDGRMDSN RYMQPQNTGG GFPPYGSSGY SAPGYGYGPA NNGMGYGGYG GYGGANPGYG GPAGAPYGNP NVPNAGYAGG
301: PPGAPRSSWN SQAPSGYGGV GYGNAASWGS SAGGGAGSGG TGSASSGQSP SGAAGYGNQS YGYGGYGGSE GSYANPTGYG AVGGRTGSGP NSNAGGGELQ
401: GSGGGYMGGG YGDANGNSGY GNAAWKSDPS QASGNYGAQT NGPHGGQVGY GGGYSAQSRQ AQQQ

Best Arabidopsis Sequence Match ( AT2G33410.1 )
(BLAST)

001: MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ

Arabidopsis Description

Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:O22791]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.