Factsheet for VIT_07s0141g00280.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g02420.t01
VIT_05s0020g04440.t01
VIT_05s0049g01660.t01
VIT_05s0094g00750.t01
VIT_07s0005g00320.t01
VIT_12s0034g00180.t01
VIT_12s0034g00190.t01
VIT_17s0000g02230.t01
VIT_18s0001g07660.t01
VIT_18s0001g12980.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10270.1	VIT_01s0010g02420.t01	AT1G13450.1	12678503
AT5G10270.1	VIT_18s0001g12980.t01	AT1G27630.1	12678503
AT5G10270.1	VIT_17s0000g02230.t01	AT3G17860.1	21798944
AT5G10270.1	VIT_05s0049g01660.t01	AT4G14300.1	12678503
AT5G64960.1	VIT_07s0005g00320.t01	AT1G02840.1	18208522
AT5G64960.1	VIT_18s0001g12980.t01	AT1G27630.1	12678503
AT5G64960.1	VIT_05s0094g00750.t01	AT2G43710.1	20706207
AT5G64960.1	VIT_12s0034g00180.t01	AT2G43710.1	20706207
AT5G64960.1	VIT_12s0034g00190.t01	AT2G43710.1	20706207
AT5G64960.1	VIT_05s0020g04440.t01	AT3G55760.1	20706207
AT5G64960.1	VIT_18s0001g07660.t01	AT4G24500.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72385	Canola	cytosol	52.02	76.79
EES15089	Sorghum	cytosol	60.89	46.75
Zm00001d032078_P002	Maize	cytosol	60.48	46.44
Bra024341.1-P	Field mustard	cytosol	68.55	42.71
Os08t0453800-00	Rice	endoplasmic reticulum, plasma membrane	54.03	41.88
AT5G10270.1	Thale cress	nucleus	84.27	41.39
AT5G64960.1	Thale cress	nucleus	84.68	40.94
VIT_06s0009g01800.t01	Wine grape	nucleus	85.08	40.81
CDY33994	Canola	nucleus	83.87	40.23
Bra031892.1-P	Field mustard	nucleus	83.87	40.15
CDX69849	Canola	nucleus	82.26	40.08
Bra009045.1-P	Field mustard	nucleus	82.26	40.08
CDX96988	Canola	nucleus	82.26	40.08
CDY31293	Canola	nucleus	83.47	39.96
Solyc04g056280.2.1	Tomato	nucleus	81.85	39.65
CDY08835	Canola	cytosol	68.15	39.49
CDY56227	Canola	nucleus	80.24	39.02
Bra028333.1-P	Field mustard	nucleus	79.84	38.98
CDY18101	Canola	cytosol	58.47	31.45
VIT_05s0124g00500.t01	Wine grape	cytosol	47.98	28.81
VIT_00s0805g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	53.23	28.39
VIT_04s0079g00700.t01	Wine grape	cytosol, plastid	47.18	26.83
VIT_18s0072g00140.t01	Wine grape	cytosol	45.16	26.48
CDY14526	Canola	cytosol	70.16	24.23
VIT_05s0020g01890.t01	Wine grape	cytosol	51.21	22.09
VIT_14s0030g01260.t01	Wine grape	cytosol, nucleus, plastid	51.21	21.82
VIT_17s0000g00620.t01	Wine grape	nucleus	51.61	21.81
VIT_17s0000g06650.t01	Wine grape	plastid	51.61	18.66
VIT_18s0001g06780.t01	Wine grape	nucleus	48.39	18.02
VIT_19s0014g02670.t01	Wine grape	nucleus	51.21	17.84
VIT_07s0031g01920.t01	Wine grape	cytosol, nucleus, plasma membrane, plastid	42.74	17.73
VIT_12s0035g01180.t01	Wine grape	nucleus	50.81	17.0
VIT_14s0108g01270.t01	Wine grape	nucleus	48.39	16.85

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100854820	wikigene:100854820	MapMan:13.1.1.2.3	MapMan:15.3.2.1.1	MapMan:18.4.3.1.3
Gene3D:3.30.200.20	ProteinID:CCB59088	ProteinID:CCB59088.1	UniProt:F6HWM3	EMBL:FN596274	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004693	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006468	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	GO:GO:0051726	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100854820
wikigene:LOC100854820	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056
PANTHER:PTHR24056:SF240	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI000210A48D	ArrayExpress:VIT_07s0141g00280	EnsemblPlantsGene:VIT_07s0141g00280	EnsemblPlants:VIT_07s0141g00280.t01	RefSeq:XP_003634832	RefSeq:XP_003634832.1

Description

No Description!

Coordinates

chr7_random:+:179123..182403

Molecular Weight (calculated)

28094.1 Da

IEP (calculated)

8.002

GRAVY (calculated)

-0.292

Length

248 amino acids

Sequence
(BLAST)

001: MAAAPLGLLN LEESPLWGSR TVDCFQQLEH IGEGTYGQVY MAREIKTGEI VALKRIRMEN EREGFPITAI REIKILKKLH HENVLKLKEI VTSPGREKDE
101: QGHPDGNKYR GGIYMVFDYM DHDLAGLSDR PGLRFSIPQV KCYMKQLLTG LHYCHVNQVL HRDIKGANLL INNEGILKLA DFGLARSFSS DHNGNLTNRV
201: ITLWYRPPEL LLGATKYGPA VDMWSVGCIF AELLYGKPIL NGNNEVRY

Best Arabidopsis Sequence Match ( AT5G10270.1 )
(BLAST)

001: MAMASFGQLN LEEPPPIWGS RSVDCFEKLE QIGEGTYGQV YMAKEIKTGE IVALKKIRMD NEREGFPITA IREIKILKKL HHENVIQLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHTGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLHAKPI LPGKNEQEQL NKIFELCGSP DEKLWPGVSK MPWFNNFKPA RPLKRRVREF FRHFDRHALE
301: LLEKMLVLDP AQRISAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQQRQNEE AAKRQKLQHP PLQHSRLPPL QHGGQSHAAP HWPAGPNHPT
401: NNAPPQVPAG PSHNFYGKPR GPPGPNRYPP SGNQSGGYNQ SRGGYSSGSY PPQGRGAPYV AGPRGPSGGP YGVGPPNYTQ GGQYGGSGSS GRGQNQRNQQ
501: YGWQQ

Arabidopsis Description

CDKC-1CDKC [Source:UniProtKB/TrEMBL;Acc:A0A178UJP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.