Factsheet for VIT_18s0001g07660.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92638	Canola	cytosol, mitochondrion, nucleus	11.82	47.67
AT4G24500.1	Thale cress	nucleus	35.45	38.56
CDX92637	Canola	cytosol, mitochondrion, nucleus	14.12	37.98
PGSC0003DMT400005187	Potato	nucleus	37.18	37.07
KRH16858	Soybean	nucleus	38.33	36.74
KRH72470	Soybean	nucleus	36.02	36.44
CDY69317	Canola	nucleus	34.01	36.42
Bra013808.1-P	Field mustard	nucleus	34.58	36.36
CDY11016	Canola	nucleus	31.41	33.75
PGSC0003DMT400024161	Potato	nucleus	27.09	32.87
Bra019224.1-P	Field mustard	nucleus	30.55	32.62
Solyc04g076410.2.1	Tomato	nucleus	25.94	32.14
Solyc12g087990.1.1	Tomato	nucleus	25.07	30.53

Protein Annotations

EntrezGene:100243767	wikigene:100243767	MapMan:35.2	EMBL:AM465666	ProteinID:CAN68127	ProteinID:CAN68127.1
ProteinID:CBI19278	ProteinID:CBI19278.3	ncoils:Coil	UniProt:E0CRX4	EMBL:FN595227	GO:GO:0000398
GO:GO:0006139	GO:GO:0006412	GO:GO:0006629	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0035196	GO:GO:0040029	GO:GO:1903730
EntrezGene:LOC100243767	wikigene:LOC100243767	PANTHER:PTHR36054	UniParc:UPI0001985306	ArrayExpress:VIT_18s0001g07660	EnsemblPlantsGene:VIT_18s0001g07660
EnsemblPlants:VIT_18s0001g07660.t01	unigene:Vvi.15174	RefSeq:XP_002283770	RefSeq:XP_002283770.1	RefSeq:XP_010664419.1	SEG:seg

Description

No Description!

Coordinates

chr18:-:5914008..5917875

Molecular Weight (calculated)

37452.5 Da

IEP (calculated)

10.388

GRAVY (calculated)

-0.821

Length

347 amino acids

Sequence
(BLAST)

001: MEESEKRRER LKAMRMEAAQ TKVSDTVDTS AMPGYLSNPL VEGSATLPVQ EDSCVTPRFD FYTDPMSAFS SNKRRSKVGN QIQQDYLTPS SNSGYTATMA
101: RMSSSLSAGP RNCEMTPSPN PPFQPNFSPG QGINQAQGLY HSSGPYRSPI EMASPFPAHQ GTPGVWNGSN GMPRYGVPSN SPRGGNFPSP GFRPVGSPSF
201: RSGRGRGHWF NNSPSPVSGR GGSSSPNSGR GRSGWFGNSM SPGSGRGRGR GLGFHAHVSA QDRPELFYNK SMVEDPWKFL KPVIWSREKA LGKMGNASDS
301: PKSWLPKSIN MKKTRVSEAT NESSSQQSLA EYLAASFNEA VNDASGT

Best Arabidopsis Sequence Match ( AT4G24500.1 )
(BLAST)

001: MEDSEKRKQM LKAMRMEAAA QNDDDATTGT ETSMSTGHLS NPLAETSNHQ QDSFETQRFD YYTDPMAAYS SFKKNKTPKQ QYISSPSHQG SSPVPPQFPP
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN

Arabidopsis Description

SICProtein SICKLE [Source:UniProtKB/Swiss-Prot;Acc:Q9SB47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.