Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92638 | Canola | cytosol, mitochondrion, nucleus | 25.85 | 97.67 |
| CDY11016 | Canola | nucleus | 86.77 | 87.31 |
| Bra013808.1-P | Field mustard | nucleus | 76.62 | 75.45 |
| AT4G24500.1 | Thale cress | nucleus | 68.31 | 69.59 |
| CDX92637 | Canola | cytosol, mitochondrion, nucleus | 27.08 | 68.22 |
| PGSC0003DMT400024161 | Potato | nucleus | 28.31 | 32.17 |
| Solyc04g076410.2.1 | Tomato | nucleus | 26.77 | 31.07 |
| VIT_18s0001g07660.t01 | Wine grape | nucleus | 32.62 | 30.55 |
| PGSC0003DMT400005187 | Potato | nucleus | 31.08 | 29.02 |
| KRH16858 | Soybean | nucleus | 27.08 | 24.31 |
| KRH72470 | Soybean | nucleus | 24.62 | 23.32 |
| Solyc12g087990.1.1 | Tomato | nucleus | 20.31 | 23.16 |
Protein Annotations
| EnsemblPlants:Bra019224.1 | EnsemblPlants:Bra019224.1-P | EnsemblPlantsGene:Bra019224 | GO:GO:0000398 | GO:GO:0006139 | GO:GO:0006412 |
| GO:GO:0006629 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0035196 | GO:GO:0040029 | GO:GO:1903730 | PANTHER:PTHR36054 | SEG:seg |
| UniParc:UPI0002540FD5 | UniProt:M4DRT1 | MapMan:35.1 | : | : | : |
Description
AT4G24500 (E=3e-107) | hydroxyproline-rich glycoprotein family protein
Coordinates
chrA03:+:25617076..25618205
Molecular Weight (calculated)
35846.1 Da
IEP (calculated)
9.048
GRAVY (calculated)
-1.045
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSEKRKQM LIAMRNEAAA PAAAQNDGSE GPETSVSTRQ LSNPLAETST HQQESCEPTR FDYYTDPMSA YSSFKRNKTS KQQDISSPGY QMSPPVPHFP
101: QSVQGSLGSD YQAHANHGGF QEAHCGGDNL HAEPRGVAPS HRAPPVPWIN NYRPPPPPFN HLGPPQWVPR PFPFFQGNPD MGNNRFGGRG CSYHNTAPQF
201: PQYGPRQASN WAGNTYPSSA RGRSRGRNTS FGRGGGRRHI EQGAERFYSN SMAEDPWKYL KPVLWKSCSV TSSRNSTGQA WRPNSIAPKK PMIIEASHKP
301: SNNQQSLAEY LAASLDEATS DDPSN
101: QSVQGSLGSD YQAHANHGGF QEAHCGGDNL HAEPRGVAPS HRAPPVPWIN NYRPPPPPFN HLGPPQWVPR PFPFFQGNPD MGNNRFGGRG CSYHNTAPQF
201: PQYGPRQASN WAGNTYPSSA RGRSRGRNTS FGRGGGRRHI EQGAERFYSN SMAEDPWKYL KPVLWKSCSV TSSRNSTGQA WRPNSIAPKK PMIIEASHKP
301: SNNQQSLAEY LAASLDEATS DDPSN
001: MEDSEKRKQM LKAMRMEAAA QNDDDATTGT ETSMSTGHLS NPLAETSNHQ QDSFETQRFD YYTDPMAAYS SFKKNKTPKQ QYISSPSHQG SSPVPPQFPP
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
Arabidopsis Description
SICProtein SICKLE [Source:UniProtKB/Swiss-Prot;Acc:Q9SB47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.