Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11016 | Canola | nucleus | 78.29 | 31.27 |
| Bra019224.1-P | Field mustard | nucleus | 68.22 | 27.08 |
| AT4G24500.1 | Thale cress | nucleus | 62.02 | 25.08 |
| CDY69317 | Canola | nucleus | 62.79 | 25.0 |
| Solyc12g087990.1.1 | Tomato | nucleus | 34.88 | 15.79 |
| VIT_18s0001g07660.t01 | Wine grape | nucleus | 37.98 | 14.12 |
| PGSC0003DMT400024161 | Potato | nucleus | 29.46 | 13.29 |
| PGSC0003DMT400005187 | Potato | nucleus | 35.66 | 13.22 |
| Solyc04g076410.2.1 | Tomato | nucleus | 28.68 | 13.21 |
| KRH72470 | Soybean | nucleus | 31.78 | 11.95 |
| KRH16858 | Soybean | nucleus | 33.33 | 11.88 |
| CDX92638 | Canola | cytosol, mitochondrion, nucleus | 1.55 | 2.33 |
Protein Annotations
| EnsemblPlants:CDX92637 | EnsemblPlantsGene:GSBRNA2T00154444001 | ncoils:Coil | PANTHER:PTHR36054 | ProteinID:CDX92637 | ProteinID:CDX92637.1 |
| UniParc:UPI0004EE7B93 | MapMan:35.1 | : | : | : | : |
Description
BnaC07g38950D
Coordinates
chrLK031873:+:117070..117677
Molecular Weight (calculated)
14148.4 Da
IEP (calculated)
6.385
GRAVY (calculated)
-0.798
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSEKRKQI LKAMRMEATA QNDCSEGSET SMNTGHLSNP LAEASTHQQE SCEAPRFDYY TDPMSAYSSF KRNNTSKQEH ISFPGNQMSP PAHQLPPSVP
101: GSLGGDYQAH ANHALGTTTI GLRLLHLTI
101: GSLGGDYQAH ANHALGTTTI GLRLLHLTI
001: MEDSEKRKQM LKAMRMEAAA QNDDDATTGT ETSMSTGHLS NPLAETSNHQ QDSFETQRFD YYTDPMAAYS SFKKNKTPKQ QYISSPSHQG SSPVPPQFPP
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
Arabidopsis Description
SICProtein SICKLE [Source:UniProtKB/Swiss-Prot;Acc:Q9SB47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.