Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g087990.1.1 | Tomato | nucleus | 70.98 | 86.67 |
| CDX92638 | Canola | cytosol, mitochondrion, nucleus | 10.63 | 43.02 |
| PGSC0003DMT400024161 | Potato | nucleus | 34.2 | 41.61 |
| VIT_18s0001g07660.t01 | Wine grape | nucleus | 37.07 | 37.18 |
| CDX92637 | Canola | cytosol, mitochondrion, nucleus | 13.22 | 35.66 |
| CDY69317 | Canola | nucleus | 32.18 | 34.57 |
| Bra013808.1-P | Field mustard | nucleus | 32.76 | 34.55 |
| AT4G24500.1 | Thale cress | nucleus | 30.46 | 33.23 |
| CDY11016 | Canola | nucleus | 29.31 | 31.58 |
| Bra019224.1-P | Field mustard | nucleus | 29.02 | 31.08 |
| KRH16858 | Soybean | nucleus | 31.9 | 30.66 |
| KRH72470 | Soybean | nucleus | 30.17 | 30.61 |
Protein Annotations
| EntrezGene:102583289 | MapMan:35.2 | ncoils:Coil | GO:GO:0000398 | GO:GO:0006139 | GO:GO:0006412 |
| GO:GO:0006629 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0035196 | GO:GO:0040029 | GO:GO:1903730 | UniProt:M0ZPL3 | PFAM:PF15502 |
| EnsemblPlantsGene:PGSC0003DMG400002050 | PGSC:PGSC0003DMG400002050 | EnsemblPlants:PGSC0003DMT400005187 | InterPro:TTDN1/SICKLE | UniParc:UPI0002954215 | RefSeq:XP_006366423.1 |
| SEG:seg | : | : | : | : | : |
Description
Hydroxyproline-rich glycoprotein family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002050]
Coordinates
chr12:-:55809205..55813539
Molecular Weight (calculated)
37385.7 Da
IEP (calculated)
9.877
GRAVY (calculated)
-1.078
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MDESEKRKER LKAMRMEASQ SGDYNEAVGH GGLTNPLTDV PSGNVESYAM PRPRFDYYTD PMAAFSANKR SNNQPHVSPQ ISQQCYTPPR ATNPQSPICT
101: PRGNYSVDQR SQGVHYNPLG NPGQNSPFGT PQRGSPSAWN NSFGTPNNYL PPNSSMGGNF ASPGIHQGGR PGFHYGQGSG QPGSGYGGSP YQGSGYRGNP
201: YQDSGHRGSP YQHSGNRGSP YQRPGNRGIP YQGSGQGRSQ WRGNSSSPIS FRGGRRGGRG SHGGTSGESR PDLYYSKSMV EDPWKELKPV IWKAFSDKSW
301: LPHSISAKKA KFPDAPVKSI PQQSLAECLA ASFNEAASSE AATDGSGT
101: PRGNYSVDQR SQGVHYNPLG NPGQNSPFGT PQRGSPSAWN NSFGTPNNYL PPNSSMGGNF ASPGIHQGGR PGFHYGQGSG QPGSGYGGSP YQGSGYRGNP
201: YQDSGHRGSP YQHSGNRGSP YQRPGNRGIP YQGSGQGRSQ WRGNSSSPIS FRGGRRGGRG SHGGTSGESR PDLYYSKSMV EDPWKELKPV IWKAFSDKSW
301: LPHSISAKKA KFPDAPVKSI PQQSLAECLA ASFNEAASSE AATDGSGT
001: MEDSEKRKQM LKAMRMEAAA QNDDDATTGT ETSMSTGHLS NPLAETSNHQ QDSFETQRFD YYTDPMAAYS SFKKNKTPKQ QYISSPSHQG SSPVPPQFPP
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
Arabidopsis Description
SICProtein SICKLE [Source:UniProtKB/Swiss-Prot;Acc:Q9SB47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.