Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69317 | Canola | nucleus | 93.64 | 95.37 |
| Bra019224.1-P | Field mustard | nucleus | 75.45 | 76.62 |
| AT4G24500.1 | Thale cress | nucleus | 72.12 | 74.61 |
| VIT_18s0001g07660.t01 | Wine grape | nucleus | 36.36 | 34.58 |
| PGSC0003DMT400024161 | Potato | nucleus | 29.39 | 33.92 |
| PGSC0003DMT400005187 | Potato | nucleus | 34.55 | 32.76 |
| Solyc04g076410.2.1 | Tomato | nucleus | 27.58 | 32.5 |
| Solyc12g087990.1.1 | Tomato | nucleus | 23.94 | 27.72 |
| KRH72470 | Soybean | nucleus | 27.58 | 26.53 |
| KRH16858 | Soybean | nucleus | 29.09 | 26.52 |
Protein Annotations
| EnsemblPlants:Bra013808.1 | EnsemblPlants:Bra013808.1-P | EnsemblPlantsGene:Bra013808 | GO:GO:0000398 | GO:GO:0006139 | GO:GO:0006412 |
| GO:GO:0006629 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0035196 | GO:GO:0040029 | GO:GO:1903730 | PANTHER:PTHR36054 | SEG:seg |
| UniParc:UPI0002546462 | UniProt:M4DBE8 | MapMan:35.1 | : | : | : |
Description
AT4G24500 (E=9e-103) | hydroxyproline-rich glycoprotein family protein
Coordinates
chrA01:+:7856260..7857827
Molecular Weight (calculated)
36331.5 Da
IEP (calculated)
8.563
GRAVY (calculated)
-1.180
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSEKRKEM LKAMRMEAAA AAAAENDGST ELGTSMNTSH LSNPLAEASI HQQESYDKPR FDYYTDPMAA YSSFKRNKSP KQQYISSPSH QMSPPVPQFP
101: PSAPGLVGND YQAHPNHGGF QEAHYGGDNL HTEPRGMAPS YRGPPAPWNN NNFRPPPPVN HLGPPQWVPR PYPFPQGNHD MGDNRYGGRG PRGGNYNNNP
201: PQFPHYGRQN SNWAGNTYPN SGRGRGRGGR GMNTSYGRGG GRRPMEQGAE RFYSNSMAED PWKYLQPVLW KSCSDASSSN STGQAWRPNS IAPKKPMISE
301: ASHNPSSNQQ SLAEYLAASL DEATCDESSN
101: PSAPGLVGND YQAHPNHGGF QEAHYGGDNL HTEPRGMAPS YRGPPAPWNN NNFRPPPPVN HLGPPQWVPR PYPFPQGNHD MGDNRYGGRG PRGGNYNNNP
201: PQFPHYGRQN SNWAGNTYPN SGRGRGRGGR GMNTSYGRGG GRRPMEQGAE RFYSNSMAED PWKYLQPVLW KSCSDASSSN STGQAWRPNS IAPKKPMISE
301: ASHNPSSNQQ SLAEYLAASL DEATCDESSN
001: MEDSEKRKQM LKAMRMEAAA QNDDDATTGT ETSMSTGHLS NPLAETSNHQ QDSFETQRFD YYTDPMAAYS SFKKNKTPKQ QYISSPSHQG SSPVPPQFPP
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
Arabidopsis Description
SICProtein SICKLE [Source:UniProtKB/Swiss-Prot;Acc:Q9SB47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.