Factsheet for AT4G24500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92638	Canola	cytosol, mitochondrion, nucleus	21.0	77.91
CDY69317	Canola	nucleus	74.29	73.15
Bra013808.1-P	Field mustard	nucleus	74.61	72.12
CDY11016	Canola	nucleus	70.53	69.66
Bra019224.1-P	Field mustard	nucleus	69.59	68.31
CDX92637	Canola	cytosol, mitochondrion, nucleus	25.08	62.02
VIT_18s0001g07660.t01	Wine grape	nucleus	38.56	35.45
PGSC0003DMT400024161	Potato	nucleus	29.15	32.52
Solyc04g076410.2.1	Tomato	nucleus	27.9	31.79
PGSC0003DMT400005187	Potato	nucleus	33.23	30.46
KRH16858	Soybean	nucleus	29.15	25.69
KRH72470	Soybean	nucleus	27.59	25.66
Solyc12g087990.1.1	Tomato	nucleus	22.57	25.26

Protein Annotations

MapMan:35.1	EntrezGene:828552	ProteinID:AEE84915.1	ProteinID:AEE84916.1	ProteinID:AEE84917.1	ArrayExpress:AT4G24500
EnsemblPlantsGene:AT4G24500	RefSeq:AT4G24500	TAIR:AT4G24500	RefSeq:AT4G24500-TAIR-G	EnsemblPlants:AT4G24500.1	TAIR:AT4G24500.1
EMBL:AY046010	EMBL:AY142488	Unigene:At.2554	EMBL:BT001099	ProteinID:CAA23013.1	ProteinID:CAB79360.1
ncoils:Coil	GO:GO:0000380	GO:GO:0000381	GO:GO:0000398	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006139	GO:GO:0006412	GO:GO:0006629
GO:GO:0006810	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0007623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009605	GO:GO:0009628
GO:GO:0009649	GO:GO:0009651	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0016020
GO:GO:0016604	GO:GO:0019538	GO:GO:0030422	GO:GO:0031047	GO:GO:0035196	GO:GO:0040029
GO:GO:1901703	GO:GO:1903730	GO:GO:2000012	RefSeq:NP_001190822.1	RefSeq:NP_001320056.1	RefSeq:NP_567704.1
PFAM:PF15502	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PANTHER:PTHR36054	UniProt:Q9SB47	InterPro:TTDN1/SICKLE	UniParc:UPI00000AC1A6	SEG:seg	:

Description

SICProtein SICKLE [Source:UniProtKB/Swiss-Prot;Acc:Q9SB47]

Coordinates

chr4:+:12658433..12660667

Molecular Weight (calculated)

35053.1 Da

IEP (calculated)

9.229

GRAVY (calculated)

-1.124

Length

319 amino acids

Sequence
(BLAST)

001: MEDSEKRKQM LKAMRMEAAA QNDDDATTGT ETSMSTGHLS NPLAETSNHQ QDSFETQRFD YYTDPMAAYS SFKKNKTPKQ QYISSPSHQG SSPVPPQFPP
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.