Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH16858 | Soybean | nucleus | 88.63 | 83.98 |
| VIT_18s0001g07660.t01 | Wine grape | nucleus | 36.44 | 36.02 |
| CDX92638 | Canola | cytosol, mitochondrion, nucleus | 8.75 | 34.88 |
| CDX92637 | Canola | cytosol, mitochondrion, nucleus | 11.95 | 31.78 |
| PGSC0003DMT400005187 | Potato | nucleus | 30.61 | 30.17 |
| PGSC0003DMT400024161 | Potato | nucleus | 25.07 | 30.07 |
| Solyc04g076410.2.1 | Tomato | nucleus | 23.91 | 29.29 |
| CDY69317 | Canola | nucleus | 26.53 | 28.09 |
| AT4G24500.1 | Thale cress | nucleus | 25.66 | 27.59 |
| Bra013808.1-P | Field mustard | nucleus | 26.53 | 27.58 |
| CDY11016 | Canola | nucleus | 24.49 | 26.01 |
| Solyc12g087990.1.1 | Tomato | nucleus | 21.28 | 25.61 |
| Bra019224.1-P | Field mustard | nucleus | 23.32 | 24.62 |
Protein Annotations
| EntrezGene:100775211 | MapMan:35.2 | EMBL:ACUP02001213 | ncoils:Coil | EnsemblPlantsGene:GLYMA_02G215100 | GO:GO:0000398 |
| GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006629 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0035196 | GO:GO:0040029 | GO:GO:1903730 |
| UniProt:K7K9X7 | EnsemblPlants:KRH72470 | ProteinID:KRH72470 | ProteinID:KRH72470.1 | PFAM:PF15502 | PANTHER:PTHR36054 |
| InterPro:TTDN1/SICKLE | UniParc:UPI00023BC973 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:40116603..40118606
Molecular Weight (calculated)
37045.3 Da
IEP (calculated)
9.012
GRAVY (calculated)
-0.973
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSEQRKKR LKQMRVQADQ AEVSGGREGS VVPGFLSNPL IEAPSTMPSR DTSYAAPRFD YYTDPMSAFS SKRNNASTQA APDNFPPSKF GGPPMAQYSS
101: PHPESKNPQM TPHPIQASPA AYRNPVWSGP GGPAHYNFPL HPSSGGTYPS PRFEPSGGPL YNTAQGIAHQ PSYSPNPPYP GYVNSPRPSY SPNPSPGYSN
201: CPMPSYSPNP SPGYRNSPSP GQGRGRGFWR NTGSPVSGWG SGQGPNFHGH RSNENTVHGP DRFYKRSMVE DPWEHLEPII WKANDGYLNT SRVPLNSQPW
301: ISKASSTKGE GSSAASVKSS SEPSLAEYLA SAFNEAANDA ENV
101: PHPESKNPQM TPHPIQASPA AYRNPVWSGP GGPAHYNFPL HPSSGGTYPS PRFEPSGGPL YNTAQGIAHQ PSYSPNPPYP GYVNSPRPSY SPNPSPGYSN
201: CPMPSYSPNP SPGYRNSPSP GQGRGRGFWR NTGSPVSGWG SGQGPNFHGH RSNENTVHGP DRFYKRSMVE DPWEHLEPII WKANDGYLNT SRVPLNSQPW
301: ISKASSTKGE GSSAASVKSS SEPSLAEYLA SAFNEAANDA ENV
001: MEDSEKRKQM LKAMRMEAAA QNDDDATTGT ETSMSTGHLS NPLAETSNHQ QDSFETQRFD YYTDPMAAYS SFKKNKTPKQ QYISSPSHQG SSPVPPQFPP
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
Arabidopsis Description
SICProtein SICKLE [Source:UniProtKB/Swiss-Prot;Acc:Q9SB47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.