Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g076410.2.1 | Tomato | nucleus | 86.36 | 88.21 |
| CDX92638 | Canola | cytosol, mitochondrion, nucleus | 12.59 | 41.86 |
| PGSC0003DMT400005187 | Potato | nucleus | 41.61 | 34.2 |
| CDY69317 | Canola | nucleus | 34.62 | 30.56 |
| CDX92637 | Canola | cytosol, mitochondrion, nucleus | 13.29 | 29.46 |
| Bra013808.1-P | Field mustard | nucleus | 33.92 | 29.39 |
| AT4G24500.1 | Thale cress | nucleus | 32.52 | 29.15 |
| CDY11016 | Canola | nucleus | 32.17 | 28.48 |
| Bra019224.1-P | Field mustard | nucleus | 32.17 | 28.31 |
| VIT_18s0001g07660.t01 | Wine grape | nucleus | 32.87 | 27.09 |
| KRH72470 | Soybean | nucleus | 30.07 | 25.07 |
| KRH16858 | Soybean | nucleus | 30.77 | 24.31 |
Protein Annotations
| EntrezGene:102603652 | MapMan:35.2 | ncoils:Coil | GO:GO:0000398 | GO:GO:0006139 | GO:GO:0006412 |
| GO:GO:0006629 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0035196 | GO:GO:0040029 | GO:GO:1903730 | UniProt:M1AJJ9 | PFAM:PF15502 |
| EnsemblPlantsGene:PGSC0003DMG400009339 | PGSC:PGSC0003DMG400009339 | EnsemblPlants:PGSC0003DMT400024161 | PANTHER:PTHR36054 | InterPro:TTDN1/SICKLE | UniParc:UPI0002966382 |
| RefSeq:XP_006338048.1 | SEG:seg | : | : | : | : |
Description
Hydroxyproline-rich glycoprotein family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009339]
Coordinates
chr4:-:65070957..65076946
Molecular Weight (calculated)
31010.9 Da
IEP (calculated)
9.400
GRAVY (calculated)
-0.945
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MEESEKRKER LKAIRKEAAE AGDNNEEQNS IGGPLDHGLT NPLIETPSAA SGKDEPRPRF DYYTDPMAAF SANNKMNNLS PQVSQPCNTS PRPMNDGSPV
101: YHAQCNYNSA QRTYRPRGVN AIPLGIRRKT NPFCTPPGNS TLDSSLGTPN NYSLPNSPQI GGVSSHGSPQ VSGAGSQYGQ GSPYQGSGFR SKAYQGSRGG
201: KGRFKFYYHK SMVEDPWKAL MPVIWKPRGD TQDCLKSCLP NSISAKRAKL GETPTKSTPQ KSLAEYLAAA FNEAAGEDTV NNQSNT
101: YHAQCNYNSA QRTYRPRGVN AIPLGIRRKT NPFCTPPGNS TLDSSLGTPN NYSLPNSPQI GGVSSHGSPQ VSGAGSQYGQ GSPYQGSGFR SKAYQGSRGG
201: KGRFKFYYHK SMVEDPWKAL MPVIWKPRGD TQDCLKSCLP NSISAKRAKL GETPTKSTPQ KSLAEYLAAA FNEAAGEDTV NNQSNT
001: MEDSEKRKQM LKAMRMEAAA QNDDDATTGT ETSMSTGHLS NPLAETSNHQ QDSFETQRFD YYTDPMAAYS SFKKNKTPKQ QYISSPSHQG SSPVPPQFPP
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
Arabidopsis Description
SICProtein SICKLE [Source:UniProtKB/Swiss-Prot;Acc:Q9SB47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.