Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013808.1-P | Field mustard | nucleus | 95.37 | 93.64 |
| CDX92638 | Canola | cytosol, mitochondrion, nucleus | 23.77 | 89.53 |
| CDY11016 | Canola | nucleus | 77.78 | 78.02 |
| AT4G24500.1 | Thale cress | nucleus | 73.15 | 74.29 |
| CDX92637 | Canola | cytosol, mitochondrion, nucleus | 25.0 | 62.79 |
| PGSC0003DMT400024161 | Potato | nucleus | 30.56 | 34.62 |
| VIT_18s0001g07660.t01 | Wine grape | nucleus | 36.42 | 34.01 |
| Solyc04g076410.2.1 | Tomato | nucleus | 28.7 | 33.21 |
| PGSC0003DMT400005187 | Potato | nucleus | 34.57 | 32.18 |
| Solyc12g087990.1.1 | Tomato | nucleus | 23.77 | 27.02 |
| KRH72470 | Soybean | nucleus | 28.09 | 26.53 |
| KRH16858 | Soybean | nucleus | 29.32 | 26.24 |
Protein Annotations
| EnsemblPlants:CDY69317 | EnsemblPlantsGene:GSBRNA2T00086581001 | GO:GO:0000398 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006629 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0035196 | GO:GO:0040029 | GO:GO:1903730 | PANTHER:PTHR36054 | ProteinID:CDY69317 | ProteinID:CDY69317.1 |
| SEG:seg | UniParc:UPI0004EEE765 | UniProt:A0A078JV03 | MapMan:35.1 | : | : |
Description
BnaA01g35180DBnaA01g35180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JV03]
Coordinates
chrLK039120:-:383..3332
Molecular Weight (calculated)
35838.0 Da
IEP (calculated)
9.076
GRAVY (calculated)
-1.229
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSEKRKEM LKAMRMEAAA AAAQNEPETS MNASHLSNPL AETSTHQQES YDKPRFDYYT DPMAAYSSFK RNKSPKQQYI SSPSHQMSPP APQFPPSAPG
101: LVGNDYQAHP NHGGFQEAHY GGDNLHTEPR GMAPSYRGPP APWNNNFRPP PPVNHLGPPQ WVPRPYPFPQ GNHDMGDNRY GGRGPRGGNY NNNPPQFPHY
201: GRQNSNWAGN TYPNSGRGRG RGGRGMNTSY GRGGGRRPME HGAERFYSNS MAEDPWKYLQ PVLWKSCSDA SSSNSTGQAW RPNSIAPKKP MISEASHKPS
301: TNQQSLAEYL AASLDEATCD ESSN
101: LVGNDYQAHP NHGGFQEAHY GGDNLHTEPR GMAPSYRGPP APWNNNFRPP PPVNHLGPPQ WVPRPYPFPQ GNHDMGDNRY GGRGPRGGNY NNNPPQFPHY
201: GRQNSNWAGN TYPNSGRGRG RGGRGMNTSY GRGGGRRPME HGAERFYSNS MAEDPWKYLQ PVLWKSCSDA SSSNSTGQAW RPNSIAPKKP MISEASHKPS
301: TNQQSLAEYL AASLDEATCD ESSN
001: MEDSEKRKQM LKAMRMEAAA QNDDDATTGT ETSMSTGHLS NPLAETSNHQ QDSFETQRFD YYTDPMAAYS SFKKNKTPKQ QYISSPSHQG SSPVPPQFPP
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
Arabidopsis Description
SICProtein SICKLE [Source:UniProtKB/Swiss-Prot;Acc:Q9SB47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.