Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400005187 | Potato | nucleus | 86.67 | 70.98 |
| CDX92637 | Canola | cytosol, mitochondrion, nucleus | 15.79 | 34.88 |
| Solyc04g076410.2.1 | Tomato | nucleus | 25.61 | 26.07 |
| VIT_18s0001g07660.t01 | Wine grape | nucleus | 30.53 | 25.07 |
| Bra013808.1-P | Field mustard | nucleus | 27.72 | 23.94 |
| CDY69317 | Canola | nucleus | 27.02 | 23.77 |
| AT4G24500.1 | Thale cress | nucleus | 25.26 | 22.57 |
| CDY11016 | Canola | nucleus | 24.56 | 21.67 |
| KRH16858 | Soybean | nucleus | 27.37 | 21.55 |
| KRH72470 | Soybean | nucleus | 25.61 | 21.28 |
| Bra019224.1-P | Field mustard | nucleus | 23.16 | 20.31 |
| CDX92638 | Canola | cytosol, mitochondrion, nucleus | 0.7 | 2.33 |
Protein Annotations
| EnsemblPlants:Solyc12g087990.1.1 | EnsemblPlantsGene:Solyc12g087990.1 | GO:GO:0000398 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006629 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0035196 | GO:GO:0040029 | GO:GO:1903730 | ncoils:Coil | SEG:seg | UniParc:UPI000276A9B1 |
| UniProt:K4DGM0 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:63487016..63489150
Molecular Weight (calculated)
30506.6 Da
IEP (calculated)
10.058
GRAVY (calculated)
-1.187
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MDESEKRKER LNAMRMEASQ SGDYNEAVGY GGLTNPLTDV PSGNVESYAM PRPRFDYYTD PMAAFSANKR SNNQPHVSPQ VSQQCYTRAT NPQSPICTPR
101: GNYSVDQRSQ GVHHTFNPLG NPGQNSPFGI PQRGSPSAWN NSFDTPKNYL PPNSSMGGNF ASPGIQRGGR PGFHYGQGSG QPGSGYGGSP YQGSGYRGNP
201: YQDSGHRGSP SQGSGHRGSP YQHSGNRGSP YQGSGQGRSQ WRGNSSSPFS FRGGRRGGRG SHGGTSGESR PDLCSSKIHF SAKPC
101: GNYSVDQRSQ GVHHTFNPLG NPGQNSPFGI PQRGSPSAWN NSFDTPKNYL PPNSSMGGNF ASPGIQRGGR PGFHYGQGSG QPGSGYGGSP YQGSGYRGNP
201: YQDSGHRGSP SQGSGHRGSP YQHSGNRGSP YQGSGQGRSQ WRGNSSSPFS FRGGRRGGRG SHGGTSGESR PDLCSSKIHF SAKPC
001: MEDSEKRKQM LKAMRMEAAA QNDDDATTGT ETSMSTGHLS NPLAETSNHQ QDSFETQRFD YYTDPMAAYS SFKKNKTPKQ QYISSPSHQG SSPVPPQFPP
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
Arabidopsis Description
SICProtein SICKLE [Source:UniProtKB/Swiss-Prot;Acc:Q9SB47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.