Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400024161 | Potato | nucleus | 88.21 | 86.36 |
| CDX92638 | Canola | cytosol, mitochondrion, nucleus | 12.5 | 40.7 |
| CDY69317 | Canola | nucleus | 33.21 | 28.7 |
| CDX92637 | Canola | cytosol, mitochondrion, nucleus | 13.21 | 28.68 |
| AT4G24500.1 | Thale cress | nucleus | 31.79 | 27.9 |
| Bra013808.1-P | Field mustard | nucleus | 32.5 | 27.58 |
| CDY11016 | Canola | nucleus | 31.43 | 27.24 |
| Bra019224.1-P | Field mustard | nucleus | 31.07 | 26.77 |
| VIT_18s0001g07660.t01 | Wine grape | nucleus | 32.14 | 25.94 |
| Solyc12g087990.1.1 | Tomato | nucleus | 26.07 | 25.61 |
| KRH72470 | Soybean | nucleus | 29.29 | 23.91 |
| KRH16858 | Soybean | nucleus | 30.36 | 23.48 |
Protein Annotations
| EnsemblPlants:Solyc04g076410.2.1 | EnsemblPlantsGene:Solyc04g076410.2 | InterPro:MPLKIP-like_vertebrate | ncoils:Coil | PANTHER:PTHR22446 | SEG:seg |
| UniParc:UPI0002765C7B | UniProt:K4BU79 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4:-:61312731..61316126
Molecular Weight (calculated)
30521.4 Da
IEP (calculated)
9.070
GRAVY (calculated)
-0.947
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MEESEKRKER LKAIREQAAE AGDNNEEQNS IGGPLDHGLT NPLIETPSAS SRKDEPRPRF DYYTDPMAAF SANNKMNNLS PQVSQPCNTP PRPMNAGSFA
101: YHAQGNYNSA QRTYWPRGVN AIPLGIRRNT NPFCMPQGDS TLGSSLGTPN NYSLPNSPQI GGISGHGSPQ VSGAGSQYGQ GSPYQGSGFR SKAYQGSRGG
201: KGRFKFYYNE SMMEDPWKAL KPVIWKPRGD TQDCLKSRLP NSISAKRAKL GETPTKSTPQ KCLAEYLAAA FNEAAGEDCE
101: YHAQGNYNSA QRTYWPRGVN AIPLGIRRNT NPFCMPQGDS TLGSSLGTPN NYSLPNSPQI GGISGHGSPQ VSGAGSQYGQ GSPYQGSGFR SKAYQGSRGG
201: KGRFKFYYNE SMMEDPWKAL KPVIWKPRGD TQDCLKSRLP NSISAKRAKL GETPTKSTPQ KCLAEYLAAA FNEAAGEDCE
001: MEDSEKRKQM LKAMRMEAAA QNDDDATTGT ETSMSTGHLS NPLAETSNHQ QDSFETQRFD YYTDPMAAYS SFKKNKTPKQ QYISSPSHQG SSPVPPQFPP
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
Arabidopsis Description
SICProtein SICKLE [Source:UniProtKB/Swiss-Prot;Acc:Q9SB47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.