Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92638 | Canola | cytosol, mitochondrion, nucleus | 24.77 | 93.02 |
| Bra019224.1-P | Field mustard | nucleus | 87.31 | 86.77 |
| CDX92637 | Canola | cytosol, mitochondrion, nucleus | 31.27 | 78.29 |
| CDY69317 | Canola | nucleus | 78.02 | 77.78 |
| AT4G24500.1 | Thale cress | nucleus | 69.66 | 70.53 |
| PGSC0003DMT400024161 | Potato | nucleus | 28.48 | 32.17 |
| Solyc04g076410.2.1 | Tomato | nucleus | 27.24 | 31.43 |
| VIT_18s0001g07660.t01 | Wine grape | nucleus | 33.75 | 31.41 |
| PGSC0003DMT400005187 | Potato | nucleus | 31.58 | 29.31 |
| KRH16858 | Soybean | nucleus | 28.48 | 25.41 |
| Solyc12g087990.1.1 | Tomato | nucleus | 21.67 | 24.56 |
| KRH72470 | Soybean | nucleus | 26.01 | 24.49 |
Protein Annotations
| EnsemblPlants:CDY11016 | EnsemblPlantsGene:GSBRNA2T00048966001 | GO:GO:0000398 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006629 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0035196 | GO:GO:0040029 | GO:GO:1903730 | ncoils:Coil | PANTHER:PTHR36054 | ProteinID:CDY11016 |
| ProteinID:CDY11016.1 | SEG:seg | UniParc:UPI0004EDC888 | UniProt:A0A078FCI4 | MapMan:35.1 | : |
Description
BnaA03g46750DBnaA03g46750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCI4]
Coordinates
chrLK032008:+:648334..649519
Molecular Weight (calculated)
35598.9 Da
IEP (calculated)
8.669
GRAVY (calculated)
-1.099
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSEKRKQM LKAMRMEAAA QNDCSEGSET SMSTSQLSNP LAETSTHQQE SCEVPRFDYY TDPMSAYSSF KRNKTSKQEH ISSPGNQMSP PAYQLPPSVP
101: GSLGGDYQTH ANHGGFQEAH CGGDNLHTEP RGVAPSHRPP PVPWNNNYRP PPPPFNHLGP PQWVPRPFPF SQGNPNMGDN RFGGRGGSYN YTAPQFPQYG
201: PRQTSNWAGN TYPNSARGRS RGRCTNTSFG RGGGRRPMEQ GAERFYSNSM AEDPWQYLRP VLWKSCPVTS SSNSTGQAWR PSSIAPKKPM IIEASHKPSN
301: NQQSLAEYLA ASLDEATGDD PSN
101: GSLGGDYQTH ANHGGFQEAH CGGDNLHTEP RGVAPSHRPP PVPWNNNYRP PPPPFNHLGP PQWVPRPFPF SQGNPNMGDN RFGGRGGSYN YTAPQFPQYG
201: PRQTSNWAGN TYPNSARGRS RGRCTNTSFG RGGGRRPMEQ GAERFYSNSM AEDPWQYLRP VLWKSCPVTS SSNSTGQAWR PSSIAPKKPM IIEASHKPSN
301: NQQSLAEYLA ASLDEATGDD PSN
001: MEDSEKRKQM LKAMRMEAAA QNDDDATTGT ETSMSTGHLS NPLAETSNHQ QDSFETQRFD YYTDPMAAYS SFKKNKTPKQ QYISSPSHQG SSPVPPQFPP
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
101: SVPPGSLCSE YQAQTNHGGF HAAHYEPRGM AHLSPSHRGP PAGWNNNFRP PPVNHSGPPQ WVPRPFPFSQ EMPNMGNNRF GGRGSYNNTP PQFSNYGRQN
201: ANWGGNTYPN SGRGRSRGRG MNTSFGRDGG RRPMEPGAER FYSNSMAEDP WKHLKPVLWK NCSDASSSSS TGQAWLPKSI APKKSVTSEA THKTSSNQQS
301: LAEYLAASLD GATCDESSN
Arabidopsis Description
SICProtein SICKLE [Source:UniProtKB/Swiss-Prot;Acc:Q9SB47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.