Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019224.1-P | Field mustard | nucleus | 97.67 | 25.85 |
| CDY11016 | Canola | nucleus | 93.02 | 24.77 |
| CDY69317 | Canola | nucleus | 89.53 | 23.77 |
| AT4G24500.1 | Thale cress | nucleus | 77.91 | 21.0 |
| PGSC0003DMT400024161 | Potato | nucleus | 41.86 | 12.59 |
| Solyc04g076410.2.1 | Tomato | nucleus | 40.7 | 12.5 |
| VIT_18s0001g07660.t01 | Wine grape | nucleus | 47.67 | 11.82 |
| PGSC0003DMT400005187 | Potato | nucleus | 43.02 | 10.63 |
| KRH72470 | Soybean | nucleus | 34.88 | 8.75 |
| KRH16858 | Soybean | nucleus | 34.88 | 8.29 |
| CDX92637 | Canola | cytosol, mitochondrion, nucleus | 2.33 | 1.55 |
| Solyc12g087990.1.1 | Tomato | nucleus | 2.33 | 0.7 |
Protein Annotations
| EnsemblPlants:CDX92638 | EnsemblPlantsGene:GSBRNA2T00154445001 | PANTHER:PTHR36054 | ProteinID:CDX92638 | ProteinID:CDX92638.1 | SEG:seg |
| UniParc:UPI0004EEE565 | MapMan:35.1 | : | : | : | : |
Description
BnaC07g38960D
Coordinates
chrLK031873:+:117908..118486
Molecular Weight (calculated)
9507.9 Da
IEP (calculated)
4.987
GRAVY (calculated)
-0.816
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MEQGAERFYS NSMAEDPWKY LKPVLWKSCS VTSSSNSTGQ AWRPNSIAPK KPMIIEASHK PSNNQQSLAE YLAASLDEAT SDDPSN
001: MEDSEKRKQM LKAMRMEAAA QNDDDATTGT ETSMSTGHLS NPLAETSNHQ QDSFETQSHQ GSSPVPPQFP PSVPPGSLCS EYQAQTNHGG FHAAHYEPRG
101: MAHLSPSHRG PPAGWNNNFR PPPVNHSGPP QWVPRPFPFS QEMPNMGNNR FGGRGSYNNT PPQFSNYGRQ NANWGGNTYP NSGRGRSRGR GMNTSFGRDG
201: GRRPMEPGAE RFYSNSMAED PWKHLKPVLW KNCSDASSSS STGQAWLPKS IAPKKSVTSE ATHKTSSNQQ SLAEYLAASL DGATCDESSN
101: MAHLSPSHRG PPAGWNNNFR PPPVNHSGPP QWVPRPFPFS QEMPNMGNNR FGGRGSYNNT PPQFSNYGRQ NANWGGNTYP NSGRGRSRGR GMNTSFGRDG
201: GRRPMEPGAE RFYSNSMAED PWKHLKPVLW KNCSDASSSS STGQAWLPKS IAPKKSVTSE ATHKTSSNQQ SLAEYLAASL DGATCDESSN
Arabidopsis Description
SICProtein SICKLE [Source:UniProtKB/Swiss-Prot;Acc:Q9SB47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.