Factsheet for VIT_17s0000g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63826	Soybean	cytosol	45.49	73.15
KRH54127	Soybean	mitochondrion	67.12	70.48
KRH41090	Soybean	cytosol	64.05	67.75
KRH59775	Soybean	nucleus	64.05	67.75
PGSC0003DMT400011092	Potato	cytosol	62.86	65.08
Solyc03g097690.2.1	Tomato	cytosol	63.2	64.97
GSMUA_Achr6P07970_001	Banana	plastid	56.73	61.78
VIT_05s0020g01890.t01	Wine grape	cytosol	60.31	61.57
AT5G50860.1	Thale cress	nucleus	60.48	61.21
VIT_05s0124g00500.t01	Wine grape	cytosol	42.93	61.02
Bra035716.1-P	Field mustard	cytosol	59.97	60.69
CDY05828	Canola	cytosol	59.97	60.59
CDY45813	Canola	cytosol	58.94	60.38
CDX71637	Canola	cytosol	59.63	60.34
Bra022756.1-P	Field mustard	cytosol	58.77	60.31
CDX84882	Canola	cytosol	58.6	57.82
VIT_04s0079g00700.t01	Wine grape	cytosol, plastid	42.76	57.57
VIT_14s0030g01260.t01	Wine grape	cytosol, nucleus, plastid	56.9	57.39
VIT_18s0072g00140.t01	Wine grape	cytosol	38.67	53.66
VIT_07s0141g00280.t01	Wine grape	cytosol	21.81	51.61
Os01t0925700-01	Rice	cytosol	31.69	50.13
Zm00001d042285_P001	Maize	endoplasmic reticulum	45.83	48.64
EES04133	Sorghum	cytosol, plasma membrane, plastid	45.66	48.11
Zm00001d011967_P001	Maize	plastid	45.66	47.94
TraesCS3A01G439200.1	Wheat	cytosol, plasma membrane, plastid	44.97	47.48
TraesCS3B01G473100.1	Wheat	cytosol, plasma membrane, plastid	44.97	47.31
TraesCS3D01G432000.1	Wheat	plasma membrane	44.8	47.3
HORVU3Hr1G095820.3	Barley	cytosol, peroxisome, plasma membrane	44.12	46.67
VIT_19s0014g02670.t01	Wine grape	nucleus	55.71	45.93
VIT_18s0001g06780.t01	Wine grape	nucleus	50.26	44.29
VIT_12s0035g01180.t01	Wine grape	nucleus	52.47	41.57
VIT_17s0000g06650.t01	Wine grape	plastid	45.66	39.07
VIT_06s0009g01800.t01	Wine grape	nucleus	33.56	38.1
GSMUA_Achr8P00590_001	Banana	cytosol, mitochondrion, nucleus, plastid	43.78	37.14
VIT_07s0031g01920.t01	Wine grape	cytosol, nucleus, plasma membrane, plastid	37.82	37.12
VIT_14s0108g01270.t01	Wine grape	nucleus	43.78	36.1
VIT_00s0805g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	21.64	27.31

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100264561	wikigene:100264561	MapMan:18.4.3.1.8	Gene3D:3.30.200.20	ProteinID:CBI15729
ProteinID:CBI15729.3	UniProt:D7SH49	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004693	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006468	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0051726
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100264561	wikigene:LOC100264561	PFAM:PF00069	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF244	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC60321	UniParc:UPI0001984F6D	ArrayExpress:VIT_17s0000g00620
EnsemblPlantsGene:VIT_17s0000g00620	EnsemblPlants:VIT_17s0000g00620.t01	unigene:Vvi.9979	RefSeq:XP_002284341	RefSeq:XP_002284341.1	SEG:seg

Description

No Description!

Coordinates

chr17:+:406968..413427

Molecular Weight (calculated)

65183.9 Da

IEP (calculated)

10.098

GRAVY (calculated)

-0.584

Length

587 amino acids

Sequence
(BLAST)

001: MGCVQSKRAS RDDPSAAGES DRQRELEELS NALKNVVKGR KEGMEVARGV EREKVTRAGD SPATERRRPR PEPYLRSQRG WPSWLLDALG DGIQDWTPRC
101: ANSFEKLDKI GQGTYSNVYK ARDLITGKIV ALKKVRFDNL GPESVKFMGR EILVLRKLNH PNVIKLEGLV TSRMSCSLYL VFEYMEHDLA GLVGHGSYLS
201: TSQGRKFTEP QVKCFMKQLL SGLEHCHNQG VLHRDIKGSN LLINNEGILK IADFGLATFF DPDRRRPMTS RVVTLWYRPP ELLLGATYYG VGVDLWSAGC
301: ILAELLGGKP IMPGRTEVEQ VHKIFKLCGS PSEEYWKKSK LPHATIFKPQ QPYKRCVAEA FKDFPCSSLP LIEALLSIDP DDRGTATSAL NSEFFTTEPY
401: ACEPSSLPKC PPTKEIDVIK LRDEARRQRG VSGKANVVDG NRRVRARDRG GRAVPAPEAN AELQANLDKW RVMNPANSES KSEKFPPPHQ DGAVGFPHTS
501: RNGPVSFGAT DTSFSSSFFN LKHSTSVRHT GTAGGPSKRK SSRAEPQTAP SRRFLRLLKT SSTTPSMHPS SKGKESVSEV FGSQKVK

Best Arabidopsis Sequence Match ( AT5G50860.1 )
(BLAST)

001: MGCVLCKEST GDKRKHNNPD EPPPADLRNT EDLPSSSSTT TAAISVEIGE KKKKDLDSIQ IQPERRTWHT GDFSAGSSRR PGMSLRTPEG WPPWLIAACG
101: DSIKDLTPRR ATTYEKLEKI GQGTYSNVYK AKDLLSGKIV ALKKVRFDNL EAESVKFMAR EILVLRRLNH PNVIKLQGLV TSRVSCSLYL VFEYMEHDLS
201: GLAATQGLKF DLPQVKCFMK QLLSGLEHCH SRGVLHRDIK GSNLLIDNDG ILKIADFGLA TFYDPKQKQT MTSRVVTLWY RPPELLLGAT SYGTGVDLWS
301: AGCIMAELLA GKPVMPGRTE VEQLHKIFKL CGSPSDSYWK KYRLPNATLF KPQHPYKRCV AEAFNGFTPS SVHLVETLLT IDPADRGTST SALNSEFFTT
401: EPLPCDPSSL PKYPPSKELN VKLRDEELRR QKGLAGKGSG IDGARRIRYR GDRTGRAIPA PEANAESQAN LDRWRSISQT NGKSKSEKFP PPHQDGAVGY
501: PLEDLSKKTS VFGAKTETSF GLSRSLKSGE GTSMRKISNK DGARGASSRK YIWGLKPPPA LGLSMDLLFR SRSEVFGIRR

Arabidopsis Description

Cyclin-dependent protein kinase-like [Source:UniProtKB/TrEMBL;Acc:Q9LSM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.