Factsheet for VIT_06s0009g01800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89779	Soybean	nucleus	91.3	90.77
KRH14656	Soybean	nucleus	88.97	89.15
KRH73489	Soybean	nucleus	88.59	88.76
GSMUA_Achr5P05370_001	Banana	nucleus	86.65	86.82
Solyc06g073630.2.1	Tomato	nucleus	84.72	86.56
PGSC0003DMT400015241	Potato	nucleus	84.53	86.36
VIT_07s0141g00280.t01	Wine grape	cytosol	40.81	85.08
VIT_00s0805g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	60.54	67.31
VIT_05s0124g00500.t01	Wine grape	cytosol	33.46	41.89
VIT_04s0079g00700.t01	Wine grape	cytosol, plastid	33.27	39.45
VIT_18s0072g00140.t01	Wine grape	cytosol	30.95	37.83
VIT_05s0020g01890.t01	Wine grape	cytosol	38.88	34.96
VIT_14s0030g01260.t01	Wine grape	cytosol, nucleus, plastid	37.91	33.68
VIT_17s0000g00620.t01	Wine grape	nucleus	38.1	33.56
VIT_18s0001g06780.t01	Wine grape	nucleus	39.27	30.48
VIT_19s0014g02670.t01	Wine grape	nucleus	41.39	30.06
VIT_17s0000g06650.t01	Wine grape	plastid	37.33	28.13
VIT_12s0035g01180.t01	Wine grape	nucleus	39.46	27.53
VIT_14s0108g01270.t01	Wine grape	nucleus	35.98	26.12
VIT_07s0031g01920.t01	Wine grape	cytosol, nucleus, plasma membrane, plastid	29.79	25.75

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100263383	wikigene:100263383	MapMan:13.1.1.2.3	MapMan:15.3.2.1.1	MapMan:18.4.3.1.3
Gene3D:3.30.200.20	ProteinID:CCB49135	ProteinID:CCB49135.1	UniProt:F6H9Y5	EMBL:FN595504	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004672	GO:GO:0004693	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006468	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	GO:GO:0051726	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100263383
wikigene:LOC100263383	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056
PANTHER:PTHR24056:SF187	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
TIGR:TC59713	UniParc:UPI00019836DA	ArrayExpress:VIT_06s0009g01800	EnsemblPlantsGene:VIT_06s0009g01800	EnsemblPlants:VIT_06s0009g01800.t01	unigene:Vvi.6701
RefSeq:XP_002272429	RefSeq:XP_002272429.1	RefSeq:XP_010651597.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:13833663..13857920

Molecular Weight (calculated)

57272.0 Da

IEP (calculated)

9.713

GRAVY (calculated)

-0.810

Length

517 amino acids

Sequence
(BLAST)

001: MAIAAPGQLN ISESPSWGSR SVDCFEKLEQ IGEGTYGQVY MAREIKTGEI VALKKIRMDN EREGFPITAI REIKILKKLH HENVIKLKEI VTSPGPEKDD
101: QGRPDGNKYK GGIYMVFEYM DHDLTGLADR PGMRFSVPQI KCYMRQLLTG LHYCHVNQVL HRDIKGSNLL IDNEGNLKLA DFGLARSFSN DHNGNLTNRV
201: ITLWYRPPEL LLGTTRYGPA VDMWSVGCIF AELLHGKPIF PGKDEPEQLN KIFELCGAPD EVNWPGVSKI PWYSNFKPTR PMKRRLREVF RHFDRHALEL
301: LERMLTLDPS QRISAKDALD AEYFWTDPLP CDPKSLPKYE SSHEFQTKKK RQQQRQHDET AKRQKLQHPQ QHARLPPIQQ SGQVHAQMRA GPNQPMHGGS
401: QPPVAAGPSH HYGKPRGPSG GPSRYPQSGN PSGGYNHPNR GGQGGGGGYG NGPFPPQGRG PPYASSGMPG AGPRGGGSGY GVGAPNYPQG GPYSGSGAGR
501: GSNMMGGNRN QNYGWQQ

Best Arabidopsis Sequence Match ( AT5G10270.1 )
(BLAST)

001: MAMASFGQLN LEEPPPIWGS RSVDCFEKLE QIGEGTYGQV YMAKEIKTGE IVALKKIRMD NEREGFPITA IREIKILKKL HHENVIQLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHTGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLHAKPI LPGKNEQEQL NKIFELCGSP DEKLWPGVSK MPWFNNFKPA RPLKRRVREF FRHFDRHALE
301: LLEKMLVLDP AQRISAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQQRQNEE AAKRQKLQHP PLQHSRLPPL QHGGQSHAAP HWPAGPNHPT
401: NNAPPQVPAG PSHNFYGKPR GPPGPNRYPP SGNQSGGYNQ SRGGYSSGSY PPQGRGAPYV AGPRGPSGGP YGVGPPNYTQ GGQYGGSGSS GRGQNQRNQQ
501: YGWQQ

Arabidopsis Description

CDKC-1CDKC [Source:UniProtKB/TrEMBL;Acc:A0A178UJP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.