Factsheet for PGSC0003DMT400015241

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g073630.2.1	Tomato	nucleus	98.42	98.42
VIT_06s0009g01800.t01	Wine grape	nucleus	86.36	84.53
KRG89779	Soybean	nucleus	84.98	82.69
KRH14656	Soybean	nucleus	83.79	82.17
KRH73489	Soybean	nucleus	83.6	81.98
GSMUA_Achr5P05370_001	Banana	nucleus	82.41	80.81
Os01t0958000-01	Rice	plasma membrane	81.62	80.51
EER93534	Sorghum	cytosol	81.42	80.47
Zm00001d033847_P003	Maize	nucleus	81.03	80.39
TraesCSU01G058100.1	Wheat	nucleus	79.25	79.09
TraesCS3A01G498200.1	Wheat	nucleus	79.25	79.09
TraesCS3B01G561200.1	Wheat	nucleus	78.66	78.5
Zm00001d013371_P001	Maize	nucleus	81.03	77.65
Os05t0389700-01	Rice	nucleus	79.25	77.26
HORVU1Hr1G056380.1	Barley	nucleus	76.88	75.98
TraesCS1B01G254800.1	Wheat	nucleus	76.09	75.34
TraesCS1D01G243300.1	Wheat	nucleus	76.09	75.2
TraesCS1A01G243300.1	Wheat	nucleus	76.09	75.05
EES18167	Sorghum	nucleus	76.48	75.0
HORVU3Hr1G110150.3	Barley	plastid	79.05	72.07
HORVU1Hr1G056390.2	Barley	plastid	67.39	66.73
PGSC0003DMT400004748	Potato	nucleus	15.22	50.99
PGSC0003DMT400073963	Potato	cytosol	21.54	40.82
PGSC0003DMT400057839	Potato	cytosol	38.74	34.03
PGSC0003DMT400011092	Potato	cytosol	37.75	33.69
PGSC0003DMT400050723	Potato	cytosol	29.64	32.54
PGSC0003DMT400027661	Potato	nucleus	37.55	32.31
PGSC0003DMT400083223	Potato	cytosol	37.35	29.67
PGSC0003DMT400071458	Potato	nucleus	37.55	29.5
PGSC0003DMT400040754	Potato	cytosol	30.63	28.81
PGSC0003DMT400032406	Potato	nucleus	40.91	28.55
PGSC0003DMT400073941	Potato	cytosol	31.82	28.45
PGSC0003DMT400034197	Potato	nucleus	37.75	28.34
PGSC0003DMT400064516	Potato	mitochondrion, nucleus	32.02	27.98
PGSC0003DMT400047231	Potato	nucleus	38.93	27.48
PGSC0003DMT400064016	Potato	nucleus	39.13	27.16
PGSC0003DMT400003634	Potato	plastid	34.19	26.09
PGSC0003DMT400076796	Potato	nucleus	34.19	25.52
PGSC0003DMT400063133	Potato	nucleus	34.39	25.07
PGSC0003DMT400073927	Potato	cytosol, nucleus, peroxisome	32.02	24.92

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102591407	MapMan:13.1.1.2.3	MapMan:15.3.2.1.1	MapMan:18.4.3.1.3	Gene3D:3.30.200.20
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1A5P0	PFAM:PF00069
EnsemblPlantsGene:PGSC0003DMG400005947	PGSC:PGSC0003DMG400005947	EnsemblPlants:PGSC0003DMT400015241	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24056	PANTHER:PTHR24056:SF187	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002959477	RefSeq:XP_006361140.1	SEG:seg	:	:

Description

Cdc2MsC [Source:PGSC_GENE;Acc:PGSC0003DMG400005947]

Coordinates

chr6:+:54219908..54226659

Molecular Weight (calculated)

56586.2 Da

IEP (calculated)

9.639

GRAVY (calculated)

-0.825

Length

506 amino acids

Sequence
(BLAST)

001: MAIAAPEQLN LTEVPTWGSR TVDCFEKLEQ IGEGTYGQVY MAKEIRTGEI VALKKIRMDN EREGFPITAI REIKILKKLH HENVIDLKEI VTSPGRDKDD
101: QGRPDGNKYK GGIYMVFEYM DHDLTGLADR PGMRFSVPQI KCYMRQLLTG LHYCHVNQVL HRDIKGSNLL IDNKGNLKLA DFGLARSFSN DHNANLTNRV
201: ITLWYRPPEL LLGTTKYGPA VDMWSVGCIF AELLHGKPIF PGKDEPEQLN KIFELCGSPD EVNWPGVSKI PWYNNFKPSR PLKRRLKEVF RHFDRHALEL
301: LDKMLTLDPS QRISAKDALD AEYFWTDPLP CDPKSLPTYE ASHEFQTKKK RQQQRQHEEA AKRQKLHHQQ QHGRLPPVQQ SGQGHTQIRP GPNPPMHASH
401: PQVAGGPSHH YAKPHGPPAG PGRYPAGGNP SGGYGHPTRG QGGAYGSGRY PPQGRGTQYS SGGMPGSSGP RGVGGPNYPH GAPYGSSGTG RGSNVNRNQQ
501: QYNWQQ

Best Arabidopsis Sequence Match ( AT5G10270.1 )
(BLAST)

001: MAMASFGQLN LEEPPPIWGS RSVDCFEKLE QIGEGTYGQV YMAKEIKTGE IVALKKIRMD NEREGFPITA IREIKILKKL HHENVIQLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHTGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLHAKPI LPGKNEQEQL NKIFELCGSP DEKLWPGVSK MPWFNNFKPA RPLKRRVREF FRHFDRHALE
301: LLEKMLVLDP AQRISAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQQRQNEE AAKRQKLQHP PLQHSRLPPL QHGGQSHAAP HWPAGPNHPT
401: NNAPPQVPAG PSHNFYGKPR GPPGPNRYPP SGNQSGGYNQ SRGGYSSGSY PPQGRGAPYV AGPRGPSGGP YGVGPPNYTQ GGQYGGSGSS GRGQNQRNQQ
501: YGWQQ

Arabidopsis Description

CDKC-1CDKC [Source:UniProtKB/TrEMBL;Acc:A0A178UJP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.