Factsheet for PGSC0003DMT400027661

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g067640.2.1	Tomato	nucleus	96.77	98.1
KRH21021	Soybean	cytosol	71.26	77.59
KRH50926	Soybean	nucleus	72.11	77.37
KRH02197	Soybean	nucleus	71.77	77.29
KRH11268	Soybean	cytosol	70.92	77.08
VIT_05s0020g01890.t01	Wine grape	cytosol	75.0	76.7
PGSC0003DMT400057839	Potato	cytosol	69.56	71.01
GSMUA_Achr6P20270_001	Banana	plastid	48.98	69.4
Os01t0367700-01	Rice	plasma membrane	65.14	68.64
KXG32500	Sorghum	plastid	64.46	68.04
Zm00001d040829_P003	Maize	plastid	63.95	67.5
GSMUA_Achr11P...	Banana	plastid	69.05	67.22
GSMUA_Achr5P26940_001	Banana	nucleus	67.01	66.55
GSMUA_Achr11P...	Banana	plastid	67.18	65.61
GSMUA_Achr2P02360_001	Banana	plastid	65.31	59.81
PGSC0003DMT400011092	Potato	cytosol	57.31	59.44
PGSC0003DMT400073963	Potato	cytosol	26.7	58.8
PGSC0003DMT400032406	Potato	nucleus	57.99	47.03
PGSC0003DMT400073941	Potato	cytosol	45.24	47.0
PGSC0003DMT400050723	Potato	cytosol	36.73	46.85
PGSC0003DMT400071458	Potato	nucleus	50.34	45.96
PGSC0003DMT400083223	Potato	cytosol	49.49	45.68
PGSC0003DMT400034197	Potato	nucleus	49.32	43.03
PGSC0003DMT400047231	Potato	nucleus	51.53	42.26
PGSC0003DMT400064016	Potato	nucleus	52.21	42.11
PGSC0003DMT400064516	Potato	mitochondrion, nucleus	39.46	40.07
PGSC0003DMT400063133	Potato	nucleus	47.28	40.06
PGSC0003DMT400076796	Potato	nucleus	44.73	38.79
PGSC0003DMT400073927	Potato	cytosol, nucleus, peroxisome	42.86	38.77
PGSC0003DMT400003634	Potato	plastid	43.54	38.61
PGSC0003DMT400040754	Potato	cytosol	35.03	38.29
PGSC0003DMT400015241	Potato	nucleus	32.31	37.55
PGSC0003DMT400004748	Potato	nucleus	2.72	10.6

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.1.8	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	UniProt:M1AQ08	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400010665	PGSC:PGSC0003DMG400010665	EnsemblPlants:PGSC0003DMT400027661
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF176	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002956F04	SEG:seg

Description

Serine/threonine-protein kinase cdk9 [Source:PGSC_GENE;Acc:PGSC0003DMG400010665]

Coordinates

chr1:+:59335614..59340759

Molecular Weight (calculated)

65091.7 Da

IEP (calculated)

10.050

GRAVY (calculated)

-0.599

Length

588 amino acids

Sequence
(BLAST)

001: MGCVFGKEIS SSETPSGEVV VGRRRENGED RDLAAQSGRR EKVGTVNKVD GGGEGRGGGS DVGEVQNGRD QKKDDNARPR SERRRSKPNP RLSNPPKNVH
101: GEQVAAGWPS WLSEVAGEAI NGWIPRRADA FEKLAKASKL FTSFIGQGTY SNVYKARDNL TGNIVALKKV RFDNLEPESV KFMAREILIL RRLDHPNVIA
201: LQGLVTSRMS CSLYLVFDYM DHDLAGLAAS PGVKFTEAQV KCYMHQLLSG LEHCHNRHVL HRDIKGSNLL INSGGVLKIA DFGLASVFDP NKKQPMTSRV
301: VTLWYRPPEL LLGATDYGVG VDLWSAGCIL AELLAGKPIM PGRTEVEQLH KIFKLCGSPS EDYWKKSRLP HATIFKPQQS YRRCITETFK DFPPSSLALI
401: ETLLAIDPAE RQTATAALLS AFFTTKPYAC EPSILPKYPP SKEMDAKRRD EDARRLRATG KANADGARRN RHRDRAVRAI PAPEANAELQ VNIDRRRLIT
501: QANAKSKSEK FPPPHQDGTL GYTLGSSHHI DPAYEPSEVP FTSMNFSYSK EPIQTWSGPL VEPAMGGAPR RKTKPSKKDS NKKGKESM

Best Arabidopsis Sequence Match ( AT1G54610.1 )
(BLAST)

001: MGCVFGREAA TTTTAEAKQA KSSKASSGVV VVGESSVTKS NGVIADDVEK KKNEEANGDK ERKSSKGDRR RSTKPNPRLS NPSKHWRGEQ VAAGWPSWLS
101: DACGEALNGW VPRKADTFEK IDKIGQGTYS NVYKAKDMLT GKIVALKKVR FDNLEPESVK FMAREILVLR RLDHPNVVKL EGLVTSRMSC SLYLVFQYMD
201: HDLAGLASSP VVKFSESEVK CLMRQLISGL EHCHSRGVLH RDIKGSNLLI DDGGVLKIAD FGLATIFDPN HKRPMTSRVV TLWYRAPELL LGATDYGVGI
301: DLWSAGCILA ELLAGRPIMP GRTEVEQLHK IYKLCGSPSE DYWKKGKFTH GAIYKPREPY KRSIRETFKD FPPSSLPLID ALLSIEPEDR QTASAALKSE
401: FFTSEPYACE PADLPKYPPS KEIDAKRRDE ETRRQRAASK AQGDGARKNR HRDRSNRALP APEANAELQS NVDRRRLITH ANAKSKSEKF PPPHQDGGAM
501: GVPLGASQHI DPTFIPRDMV PSFTSSSFNF SKDEPPTQVQ TWSGPLGHPI TGVSRKKKDN TKSSKGKRAV VA

Arabidopsis Description

Probable serine/threonine-protein kinase At1g54610 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.