Factsheet for PGSC0003DMT400073963

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073941	Potato	cytosol	83.52	39.4
PGSC0003DMT400073927	Potato	cytosol, nucleus, peroxisome	78.65	32.31
PGSC0003DMT400050723	Potato	cytosol	51.69	29.93
PGSC0003DMT400057839	Potato	cytosol	57.68	26.74
PGSC0003DMT400027661	Potato	nucleus	58.8	26.7
PGSC0003DMT400011092	Potato	cytosol	55.06	25.93
PGSC0003DMT400040754	Potato	cytosol	51.31	25.46
PGSC0003DMT400064516	Potato	mitochondrion, nucleus	52.06	24.01
PGSC0003DMT400083223	Potato	cytosol	55.81	23.39
PGSC0003DMT400034197	Potato	nucleus	58.43	23.15
PGSC0003DMT400047231	Potato	nucleus	61.8	23.01
PGSC0003DMT400071458	Potato	nucleus	55.43	22.98
PGSC0003DMT400032406	Potato	nucleus	59.55	21.93
PGSC0003DMT400015241	Potato	nucleus	40.82	21.54
PGSC0003DMT400003634	Potato	plastid	53.18	21.42
PGSC0003DMT400063133	Potato	nucleus	54.68	21.04
PGSC0003DMT400076796	Potato	nucleus	52.81	20.8
PGSC0003DMT400064016	Potato	nucleus	53.18	19.48
PGSC0003DMT400004748	Potato	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.510.10	Gene3D:3.30.200.20	MapMan:50.2.7	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1CSX5	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400028742	PGSC:PGSC0003DMG400028742
EnsemblPlants:PGSC0003DMT400073963	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF234
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000295FAA6

Description

Serine/threonine-protein kinase cdk9 [Source:PGSC_GENE;Acc:PGSC0003DMG400028742]

Coordinates

chr7:-:6363686..6365559

Molecular Weight (calculated)

29888.5 Da

IEP (calculated)

8.062

GRAVY (calculated)

-0.194

Length

267 amino acids

Sequence
(BLAST)

001: MTDQKEENSS TTRNRLNPRL SRGVPKGLES ELVAAGWPKW LVDVASEALI GWLPRTPDTF EKIHKIGQGS YSNVYKARDC LHNKIVVLKK VCADNLDPGS
101: FKFMAREIVL LRRLGDHPNV IKLEGVVPSK MACSLVFDCM EYDLKGIQEQ KGVKLSEPEI KCYMNQLLKG LDHCHSRGIL HRDVKTSNLL VNKDGILKIA
201: DFGLSTFFDP EQSIPLTNII GTLWYRPPEL LLGLNHYGVG VDLWGVGCVL GELFTGKPIM PGKTEFE

Best Arabidopsis Sequence Match ( AT1G03740.1 )
(BLAST)

001: MGCVNSRHRP FRRKSTTLKE SSEEKRSSRI DSSRRIDDWI QPEDGFDRLS NSGDAKVRLI ESEMFSTSRC HDHQIGKILE NPATVAHMDR VVHDQELRRA
101: SSAVVDSDLD IDPKVVKAKL DRWNSKDSKV RLIESEKLSS SMFSEHHQIE KGVEKPEVEA SVRVVHRELK RGSSIVSPKD AERKQVAAGW PSWLVSVAGE
201: SLVDWAPRRA NTFEKLEKIG QGTYSSVYRA RDLLHNKIVA LKKVRFDLND MESVKFMARE IIVMRRLDHP NVLKLEGLIT APVSSSLYLV FEYMDHDLLG
301: LSSLPGVKFT EPQVKCYMRQ LLSGLEHCHS RGVLHRDIKG SNLLIDSKGV LKIADFGLAT FFDPAKSVSL TSHVVTLWYR PPELLLGASH YGVGVDLWST
401: GCILGELYAG KPILPGKTEV EQLHKIFKLC GSPTENYWRK QKLPSSAGFK TAIPYRRKVS EMFKDFPASV LSLLETLLSI DPDHRSSADR ALESEYFKTK
501: PFACDPSNLP KYPPSKEIDA KMRDEAKRQQ PMRAEKQERQ DSMTRISHER KFVPPVKANN SLSMTMEKQY KDLRSRNDSF KSFKEERTPH GPVPDYQNMQ
601: HNRNNQTGVR ISHSGPLMSN RNMAKSTMHV KENALPRYPP ARVNPKMLSG SVSSKTLLER QDQPVTNQRR RDRRAYNRAD TMDSRHMTAP IDPSWYNPSD
701: SKIYMSGPLL AQPSRVDQML EEHDRQLQEF NRQALKTPQG

Arabidopsis Description

F21B7.34 [Source:UniProtKB/TrEMBL;Acc:Q9LR53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.