Factsheet for PGSC0003DMT400011092

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g097690.2.1	Tomato	cytosol	96.47	95.8
KRH63826	Soybean	cytosol	47.44	73.7
KRH54127	Soybean	mitochondrion	68.96	69.95
KRH59775	Soybean	nucleus	64.9	66.31
KRH41090	Soybean	cytosol	64.37	65.77
VIT_17s0000g00620.t01	Wine grape	nucleus	65.08	62.86
GSMUA_Achr6P07970_001	Banana	plastid	58.55	61.6
Bra022756.1-P	Field mustard	cytosol	61.2	60.66
CDX71637	Canola	cytosol	61.9	60.52
Bra035716.1-P	Field mustard	cytosol	61.55	60.17
CDY05828	Canola	cytosol	61.55	60.07
AT5G50860.1	Thale cress	nucleus	61.2	59.83
CDY45813	Canola	cytosol	60.32	59.69
PGSC0003DMT400057839	Potato	cytosol	59.61	58.68
CDX84882	Canola	cytosol	61.02	58.15
PGSC0003DMT400027661	Potato	nucleus	59.44	57.31
PGSC0003DMT400073963	Potato	cytosol	25.93	55.06
Zm00001d042285_P001	Maize	endoplasmic reticulum	46.74	47.92
EES04133	Sorghum	cytosol, plasma membrane, plastid	46.56	47.4
Zm00001d011967_P001	Maize	plastid	46.56	47.23
Os01t0925700-01	Rice	cytosol	30.86	47.17
PGSC0003DMT400050723	Potato	cytosol	38.27	47.07
TraesCS3A01G439200.1	Wheat	cytosol, plasma membrane, plastid	44.8	45.68
TraesCS3B01G473100.1	Wheat	cytosol, plasma membrane, plastid	44.8	45.52
HORVU3Hr1G095820.3	Barley	cytosol, peroxisome, plasma membrane	44.44	45.41
TraesCS3D01G432000.1	Wheat	plasma membrane	44.44	45.32
PGSC0003DMT400073941	Potato	cytosol	43.92	43.99
PGSC0003DMT400032406	Potato	nucleus	55.2	43.17
PGSC0003DMT400071458	Potato	nucleus	47.97	42.24
PGSC0003DMT400083223	Potato	cytosol	46.74	41.6
PGSC0003DMT400034197	Potato	nucleus	48.32	40.65
PGSC0003DMT400047231	Potato	nucleus	51.15	40.45
PGSC0003DMT400064016	Potato	nucleus	51.32	39.92
PGSC0003DMT400063133	Potato	nucleus	47.27	38.62
PGSC0003DMT400064516	Potato	mitochondrion, nucleus	39.15	38.34
PGSC0003DMT400015241	Potato	nucleus	33.69	37.75
PGSC0003DMT400040754	Potato	cytosol	35.63	37.55
PGSC0003DMT400003634	Potato	plastid	43.39	37.1
PGSC0003DMT400073927	Potato	cytosol, nucleus, peroxisome	42.5	37.08
PGSC0003DMT400076796	Potato	nucleus	43.74	36.58
GSMUA_Achr8P00590_001	Banana	cytosol, mitochondrion, nucleus, plastid	43.39	35.55
PGSC0003DMT400004748	Potato	nucleus	2.82	10.6

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102602595	MapMan:18.4.3.1.8	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0046777
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M0ZZ15	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400004340	PGSC:PGSC0003DMG400004340
EnsemblPlants:PGSC0003DMT400011092	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF244
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000296404F
RefSeq:XP_006366910.1	SEG:seg	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004340]

Coordinates

chr3:+:45737802..45743916

Molecular Weight (calculated)

63279.5 Da

IEP (calculated)

9.770

GRAVY (calculated)

-0.538

Length

567 amino acids

Sequence
(BLAST)

001: MGCVFGKIVS DGRTQNSNNR NASDGGVGAP GDEVKITQPP PAEGPNRTES VSEYYSFRTL GNSFATNQQG WPSWLVAVAG DAIKDWTPRR ADTFQKIEKI
101: GQGTYSNVYK AKDLITGKIV ALKKVRFDTL EPESVKFMAR EILVLKKLDH PNVIKLEGLV TSRMSSSLYL VFEYMEHDLA GLAAVQKVKF SESQVKCYMK
201: QLLSGLEHCH NNGVLHRDVK GSNLLIDNEG ILKIADFGLA SFYDPEHKQP MTSRVVTLWY RPPELLLGAT NYGVGVDLWS AGCILAELLA RKPIFPGRTE
301: VEQLHKIFRL CGSPSEEYWR KFKLPNATLF KPQQPYKRCI DDTFKEFPPS SHPMIATLLA IDPDERGTAT AALNSEFLTT EPYPCEPSSL PKYPPSKEMD
401: IKLRDEAARR QSGLHGKAHT GDGVKKVRRE KVSRAIPAPE ANAELQPNLD RWRMMTQANA KSKSEKFPPP HQDGAVGYPL NASHNGPASF SIADASFDSS
501: FDPKSRSLRS TTTTGGTSRQ RRTKKEEPHM ALSRKFIHAF LPSSFRPSID MRLRGRVSVS ETFSHHR

Best Arabidopsis Sequence Match ( AT5G50860.1 )
(BLAST)

001: MGCVLCKEST GDKRKHNNPD EPPPADLRNT EDLPSSSSTT TAAISVEIGE KKKKDLDSIQ IQPERRTWHT GDFSAGSSRR PGMSLRTPEG WPPWLIAACG
101: DSIKDLTPRR ATTYEKLEKI GQGTYSNVYK AKDLLSGKIV ALKKVRFDNL EAESVKFMAR EILVLRRLNH PNVIKLQGLV TSRVSCSLYL VFEYMEHDLS
201: GLAATQGLKF DLPQVKCFMK QLLSGLEHCH SRGVLHRDIK GSNLLIDNDG ILKIADFGLA TFYDPKQKQT MTSRVVTLWY RPPELLLGAT SYGTGVDLWS
301: AGCIMAELLA GKPVMPGRTE VEQLHKIFKL CGSPSDSYWK KYRLPNATLF KPQHPYKRCV AEAFNGFTPS SVHLVETLLT IDPADRGTST SALNSEFFTT
401: EPLPCDPSSL PKYPPSKELN VKLRDEELRR QKGLAGKGSG IDGARRIRYR GDRTGRAIPA PEANAESQAN LDRWRSISQT NGKSKSEKFP PPHQDGAVGY
501: PLEDLSKKTS VFGAKTETSF GLSRSLKSGE GTSMRKISNK DGARGASSRK YIWGLKPPPA LGLSMDLLFR SRSEVFGIRR

Arabidopsis Description

Cyclin-dependent protein kinase-like [Source:UniProtKB/TrEMBL;Acc:Q9LSM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.