Factsheet for PGSC0003DMT400073941

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073963	Potato	cytosol	39.4	83.52
PGSC0003DMT400073927	Potato	cytosol, nucleus, peroxisome	85.34	74.31
PGSC0003DMT400057839	Potato	cytosol	47.88	47.05
PGSC0003DMT400027661	Potato	nucleus	47.0	45.24
PGSC0003DMT400050723	Potato	cytosol	36.57	44.9
PGSC0003DMT400011092	Potato	cytosol	43.99	43.92
PGSC0003DMT400034197	Potato	nucleus	48.06	40.36
PGSC0003DMT400040754	Potato	cytosol	38.34	40.33
PGSC0003DMT400047231	Potato	nucleus	51.06	40.31
PGSC0003DMT400032406	Potato	nucleus	51.24	40.0
PGSC0003DMT400083223	Potato	cytosol	44.7	39.72
PGSC0003DMT400071458	Potato	nucleus	44.52	39.13
PGSC0003DMT400064516	Potato	mitochondrion, nucleus	36.75	35.92
PGSC0003DMT400063133	Potato	nucleus	43.99	35.88
PGSC0003DMT400003634	Potato	plastid	41.34	35.29
PGSC0003DMT400064016	Potato	nucleus	44.88	34.84
PGSC0003DMT400076796	Potato	nucleus	41.17	34.37
PGSC0003DMT400015241	Potato	nucleus	28.45	31.82
PGSC0003DMT400004748	Potato	nucleus	1.77	6.62

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102593086	MapMan:18.4.3.1.8	Gene3D:3.30.200.20	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1CSW1	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400028733
PGSC:PGSC0003DMG400028733	EnsemblPlants:PGSC0003DMT400073941	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056
PANTHER:PTHR24056:SF203	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI0002951D37	RefSeq:XP_006361660.1	SEG:seg	:	:	:

Description

Serine/threonine-protein kinase cdk9 [Source:PGSC_GENE;Acc:PGSC0003DMG400028733]

Coordinates

chr7:+:6461211..6463185

Molecular Weight (calculated)

63873.6 Da

IEP (calculated)

8.650

GRAVY (calculated)

-0.502

Length

566 amino acids

Sequence
(BLAST)

001: MGSSHGKSST IRDQSVEGTV SSDVVETFVA EEKEEILHTR RQKPNPRLSR GVPKGIEGEL VVAGWPNWLV SVAGDALNGW LPRRADTFEK IDKIGQGTYS
101: NVYKGRDRLL NKVVALKKVR FDNLDPESVK FMAREIILLR RLGDHPNVIK LEGVVTSKMS YSLYLVFDCM EYDLKGIQEQ KGVKLSEPEI KCYMNQLLKG
201: LDHCHSRGIL HRDVKTSNLL VNKDGILKIA DFGLSTFFDP EQSIPLTSRI VTLFYRPPEL LLGSNYYGVG VDLWGVGCVL GELFTGKPIM PGRTEVEQLH
301: KIFKLCGSPS DDFWKKSKLP NAVMFQPIEP YRRILHTTFH DLPAAAVGLM DTLLSIKAEY RGTAALALQN EFFTTEPFAC DPSSLPQCPP RKEIDAKKTE
401: IEGSRVRSYA RDKSVRAVPA PEANAELKSN IDRRQLIAHS ETWNRLEKTN EYVSGCVINE GTNSSTFFQV SSRKEGSENY TQREIRKEPI HDIKGKKKWS
501: GPLPVPSDKM HESEGLDLVE DDQYFGPLPS ASKPIDVDKI IREHDRQIQE SVERAKQQKK LAKARY

Best Arabidopsis Sequence Match ( AT1G53050.1 )
(BLAST)

001: MGCVCGKPSA IEDSKDSPRE RFSSKSSSEF RVSRPVASSR REEPLRIKER SDVVSVRPVL SNKQSNVSLH LRGENLSRRE KRIENVAATS PLAMSITIAK
101: ATEGEYVAAG WPPWLASVAG EAIRGWVPRR ADSFEKLDKI GQGTYSNVYR ARDLDQKKIV ALKKVRFDNL EPESVRFMAR EIQILRRLDH PNIIKLEGLV
201: TSRMSCSLYL VFEYMEHDLA GLASHPAIKF SESQVKCYLQ QLLHGLDHCH SRGVLHRDIK GSNLLIDNSG VLKIADFGLA SFFDPRQTQP LTSRVVTLWY
301: RPPELLLGAT RYGAAVDLWS AGCILAELYA GKPIMPGRTE VEQLHKIFKL CGSPTEDYWV KSRLPHATIF KPTQPYKRLV GETFKEFPQP ALALLETLLS
401: VNPDDRGTAT AALKSEFFST RPLPCDPSSL PKYPPSKELD ARMRDEESRR QVGGNRDQRH QERRGTKESR AIPAPDANAE LVASMQKRQS QSTNRSRSEK
501: FNPHPEEVAS GFPIDPPRPS SQAFEPNRES QGNIIPHKRA SHSGPLSRRS ASAKGRRNYQ DSQKVSSIAD YSAMPGFAAT RTGAPQQETC RGMTRLPGSF
601: KETSEEANQE ENGRSNKKDP ILLGYGSKGH KIHYSGPLVV PSGNMDQVLK DHDRHIQEAV RRARIDKARV KKLQADEASS QQVATNHPSS VSSR

Arabidopsis Description

F8L10.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9LNN0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.