Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015241 | Potato | nucleus | 50.99 | 15.22 |
| PGSC0003DMT400057839 | Potato | cytosol | 12.58 | 3.3 |
| PGSC0003DMT400032406 | Potato | nucleus | 15.23 | 3.17 |
| PGSC0003DMT400083223 | Potato | cytosol | 12.58 | 2.98 |
| PGSC0003DMT400011092 | Potato | cytosol | 10.6 | 2.82 |
| PGSC0003DMT400071458 | Potato | nucleus | 11.92 | 2.8 |
| PGSC0003DMT400027661 | Potato | nucleus | 10.6 | 2.72 |
| PGSC0003DMT400047231 | Potato | nucleus | 11.26 | 2.37 |
| PGSC0003DMT400064016 | Potato | nucleus | 11.26 | 2.33 |
| PGSC0003DMT400040754 | Potato | cytosol | 7.95 | 2.23 |
| PGSC0003DMT400034197 | Potato | nucleus | 9.93 | 2.23 |
| PGSC0003DMT400003634 | Potato | plastid | 9.27 | 2.11 |
| PGSC0003DMT400076796 | Potato | nucleus | 7.95 | 1.77 |
| PGSC0003DMT400073941 | Potato | cytosol | 6.62 | 1.77 |
| PGSC0003DMT400063133 | Potato | nucleus | 7.28 | 1.59 |
| PGSC0003DMT400073927 | Potato | cytosol, nucleus, peroxisome | 6.62 | 1.54 |
| PGSC0003DMT400064516 | Potato | mitochondrion, nucleus | 3.31 | 0.86 |
| PGSC0003DMT400050723 | Potato | cytosol | 0.66 | 0.22 |
| PGSC0003DMT400073963 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400004748 | EnsemblPlantsGene:PGSC0003DMG400001882 | PANTHER:PTHR24056 | PANTHER:PTHR24056:SF240 | PGSC:PGSC0003DMG400001882 | SEG:seg |
| UniParc:UPI00029499B9 | UniProt:M0ZNW3 | MapMan:35.2 | : | : | : |
Description
Cyclin dependent kinase C [Source:PGSC_GENE;Acc:PGSC0003DMG400001882]
Coordinates
chr4:-:50677754..50678618
Molecular Weight (calculated)
15558.6 Da
IEP (calculated)
10.976
GRAVY (calculated)
-1.344
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKRHKLQHP QQHSRLPPIQ QPGHSQHWGG STHQMSNSQP ATSAGAGHHQ FGKPRGTGGS NRYPPGGNPG GGYYQDRGAQ GGGYSSGAYP PQGRAPPFPG
101: SGLAPSGPRG PSGGYGGPPN YSQSGQYGGS GAGRGSNQMS GNRNQQYGWQ Q
101: SGLAPSGPRG PSGGYGGPPN YSQSGQYGGS GAGRGSNQMS GNRNQQYGWQ Q
001: MAMASFGQLN LEEPPPIWGS RSVDCFEKLE QIGEGTYGQV YMAKEIKTGE IVALKKIRMD NEREGFPITA IREIKILKKL HHENVIQLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHTGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLHAKPI LPGKNEQEQL NKIFELCGSP DEKLWPGVSK MPWFNNFKPA RPLKRRVREF FRHFDRHALE
301: LLEKMLVLDP AQRISAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQQRQNEE AAKRQKLQHP PLQHSRLPPL QHGGQSHAAP HWPAGPNHPT
401: NNAPPQVPAG PSHNFYGKPR GPPGPNRYPP SGNQSGGYNQ SRGGYSSGSY PPQGRGAPYV AGPRGPSGGP YGVGPPNYTQ GGQYGGSGSS GRGQNQRNQQ
501: YGWQQ
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHTGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLHAKPI LPGKNEQEQL NKIFELCGSP DEKLWPGVSK MPWFNNFKPA RPLKRRVREF FRHFDRHALE
301: LLEKMLVLDP AQRISAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQQRQNEE AAKRQKLQHP PLQHSRLPPL QHGGQSHAAP HWPAGPNHPT
401: NNAPPQVPAG PSHNFYGKPR GPPGPNRYPP SGNQSGGYNQ SRGGYSSGSY PPQGRGAPYV AGPRGPSGGP YGVGPPNYTQ GGQYGGSGSS GRGQNQRNQQ
501: YGWQQ
Arabidopsis Description
CDKC-1CDKC [Source:UniProtKB/TrEMBL;Acc:A0A178UJP9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.