Factsheet for VIT_05s0020g01890.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21021	Soybean	cytosol	78.09	83.15
KRH11268	Soybean	cytosol	77.74	82.62
KRH02197	Soybean	nucleus	77.22	81.32
KRH50926	Soybean	nucleus	77.22	81.02
Solyc01g067640.2.1	Tomato	nucleus	77.04	76.38
PGSC0003DMT400027661	Potato	nucleus	76.7	75.0
VIT_14s0030g01260.t01	Wine grape	cytosol, nucleus, plastid	74.78	73.88
Os01t0367700-01	Rice	plasma membrane	70.96	73.12
Zm00001d040829_P003	Maize	plastid	69.39	71.63
KXG32500	Sorghum	plastid	69.39	71.63
GSMUA_Achr5P26940_001	Banana	nucleus	73.04	70.95
GSMUA_Achr11P...	Banana	plastid	73.91	70.36
GSMUA_Achr6P20270_001	Banana	plastid	50.61	70.12
GSMUA_Achr11P...	Banana	plastid	70.96	67.77
GSMUA_Achr2P02360_001	Banana	plastid	69.91	62.62
VIT_05s0124g00500.t01	Wine grape	cytosol	44.7	62.23
VIT_17s0000g00620.t01	Wine grape	nucleus	61.57	60.31
VIT_04s0079g00700.t01	Wine grape	cytosol, plastid	44.7	58.95
VIT_18s0072g00140.t01	Wine grape	cytosol	41.04	55.79
VIT_07s0141g00280.t01	Wine grape	cytosol	22.09	51.21
VIT_19s0014g02670.t01	Wine grape	nucleus	60.17	48.6
VIT_18s0001g06780.t01	Wine grape	nucleus	53.91	46.55
VIT_12s0035g01180.t01	Wine grape	nucleus	57.39	44.53
VIT_17s0000g06650.t01	Wine grape	plastid	49.74	41.69
VIT_14s0108g01270.t01	Wine grape	nucleus	48.52	39.19
VIT_06s0009g01800.t01	Wine grape	nucleus	34.96	38.88
VIT_07s0031g01920.t01	Wine grape	cytosol, nucleus, plasma membrane, plastid	39.83	38.29
VIT_00s0805g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	22.43	27.74

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100240938	wikigene:100240938	MapMan:18.4.3.1.8	Gene3D:3.30.200.20	ProteinID:CCB50347
ProteinID:CCB50347.1	UniProt:F6HDH7	EMBL:FN595749	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004693	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006468	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0051726
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100240938	wikigene:LOC100240938	PFAM:PF00069	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF176	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC54740	UniParc:UPI00015C7CB4	ArrayExpress:VIT_05s0020g01890
EnsemblPlantsGene:VIT_05s0020g01890	EnsemblPlants:VIT_05s0020g01890.t01	unigene:Vvi.5357	RefSeq:XP_002276606	RefSeq:XP_002276606.1	SEG:seg

Description

No Description!

Coordinates

chr5:+:3594999..3606303

Molecular Weight (calculated)

63923.4 Da

IEP (calculated)

9.889

GRAVY (calculated)

-0.594

Length

575 amino acids

Sequence
(BLAST)

001: MGCVFGREVS AKRVVERRED RDVAAAEAAA ATVAVVRVEK EEVRNGGDRK EEEKEGSVRS RRRSGRPNPR LSNPPKNVHG EQVAAGWPSW LSAAAGEAIN
101: GWTPRRADTF EKLDKIGQGT YSNVYKARDT LTGKIVALKK VRFDNLEPES VKFMAREIHI LRRLDHPNVV KLEGLVTSRM SCSLYLVFEY MEHDLAGLAA
201: SPGIKFTEPQ VKCYMHQLLS GLEHCHNRNV LHRDIKGSNL LLDNGGVLKI ADFGLASTFD PNHKQPMTSR VVTLWYRPPE LLLGATEYGV GVDLWSAGCI
301: LAELLAGKPI MPGRTEVEQL HKIFKLCGSP SEEYWKKSKL PHATIFKPQQ SYKRCIAETF KDFPASSLPL IETLLAIDPA ERQTATAALR SEFFTTKPYA
401: CEPSSLPKYP PSKEMDAKLR DEEARRLRAA GKANVDGVKK TRTRDRAVRA MPAPEANAEL QANLDRRRLI THANAKSKSE KFPPPHQDGT LGYPLGSSHH
501: LDPVFDPPDV PFSSSNFTYS KAPIQTWSGP LVDPAAVGAP RRKKYMAGDG HAQSKQPKDS HRDKNSARVK EKEGM

Best Arabidopsis Sequence Match ( AT1G54610.1 )
(BLAST)

001: MGCVFGREAA TTTTAEAKQA KSSKASSGVV VVGESSVTKS NGVIADDVEK KKNEEANGDK ERKSSKGDRR RSTKPNPRLS NPSKHWRGEQ VAAGWPSWLS
101: DACGEALNGW VPRKADTFEK IDKIGQGTYS NVYKAKDMLT GKIVALKKVR FDNLEPESVK FMAREILVLR RLDHPNVVKL EGLVTSRMSC SLYLVFQYMD
201: HDLAGLASSP VVKFSESEVK CLMRQLISGL EHCHSRGVLH RDIKGSNLLI DDGGVLKIAD FGLATIFDPN HKRPMTSRVV TLWYRAPELL LGATDYGVGI
301: DLWSAGCILA ELLAGRPIMP GRTEVEQLHK IYKLCGSPSE DYWKKGKFTH GAIYKPREPY KRSIRETFKD FPPSSLPLID ALLSIEPEDR QTASAALKSE
401: FFTSEPYACE PADLPKYPPS KEIDAKRRDE ETRRQRAASK AQGDGARKNR HRDRSNRALP APEANAELQS NVDRRRLITH ANAKSKSEKF PPPHQDGGAM
501: GVPLGASQHI DPTFIPRDMV PSFTSSSFNF SKDEPPTQVQ TWSGPLGHPI TGVSRKKKDN TKSSKGKRAV VA

Arabidopsis Description

Probable serine/threonine-protein kinase At1g54610 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.