Factsheet for VIT_00s0805g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g01800.t01	Wine grape	nucleus	67.31	60.54
Os01t0958000-01	Rice	plasma membrane	63.23	57.31
Zm00001d033847_P003	Maize	nucleus	62.37	56.86
EER93534	Sorghum	cytosol	61.72	56.05
TraesCSU01G058100.1	Wheat	nucleus	61.08	56.02
TraesCS3A01G498200.1	Wheat	nucleus	60.86	55.82
TraesCS3B01G561200.1	Wheat	nucleus	60.65	55.62
Zm00001d013371_P001	Maize	nucleus	62.58	55.11
Os05t0389700-01	Rice	nucleus	60.65	54.34
EES18167	Sorghum	nucleus	60.22	54.26
TraesCS1B01G254800.1	Wheat	nucleus	59.14	53.82
HORVU1Hr1G056390.2	Barley	plastid	59.14	53.82
TraesCS1A01G243300.1	Wheat	nucleus	59.14	53.61
HORVU1Hr1G056380.1	Barley	nucleus	58.92	53.52
TraesCS1D01G243300.1	Wheat	nucleus	58.92	53.52
VIT_07s0141g00280.t01	Wine grape	cytosol	28.39	53.23
HORVU3Hr1G110150.3	Barley	plastid	60.43	50.63
VIT_05s0124g00500.t01	Wine grape	cytosol	24.73	27.84
VIT_04s0079g00700.t01	Wine grape	cytosol, plastid	24.73	26.38
VIT_05s0020g01890.t01	Wine grape	cytosol	27.74	22.43
VIT_18s0072g00140.t01	Wine grape	cytosol	20.0	21.99
VIT_14s0030g01260.t01	Wine grape	cytosol, nucleus, plastid	27.1	21.65
VIT_17s0000g00620.t01	Wine grape	nucleus	27.31	21.64
VIT_18s0001g06780.t01	Wine grape	nucleus	29.89	20.87
VIT_19s0014g02670.t01	Wine grape	nucleus	31.18	20.37
VIT_17s0000g06650.t01	Wine grape	plastid	28.39	19.24
VIT_12s0035g01180.t01	Wine grape	nucleus	29.68	18.62
VIT_14s0108g01270.t01	Wine grape	nucleus	26.24	17.13
VIT_07s0031g01920.t01	Wine grape	cytosol, nucleus, plasma membrane, plastid	20.43	15.89

Protein Annotations

Gene3D:1.10.510.10	Gene3D:3.30.200.20	MapMan:50.2.7	ProteinID:CCB45335.1	UniProt:F6GZE9	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004693	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006468
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0051726	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFscan:PS50011
PANTHER:PTHR24056	PANTHER:PTHR24056:SF240	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	UniParc:UPI0002108C8A
ArrayExpress:VIT_00s0805g00020	EnsemblPlantsGene:VIT_00s0805g00020	EnsemblPlants:VIT_00s0805g00020.t01	SEG:seg	:	:

Description

Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6GZE9]

Coordinates

chrUn:+:35561049..35572579

Molecular Weight (calculated)

48822.7 Da

IEP (calculated)

9.747

GRAVY (calculated)

-0.799

Length

465 amino acids

Sequence
(BLAST)

001: MIYVSTSAEE FTCLYLRERR RRTFTIFPIT AIREIKILKK LHHENVLKLK EIVTSPGREK DEQGHPDGNK YRGGIYMVFD YMDHDLAGLS DRPGLRFSIP
101: QVKCYMKQLL TGLHYCHVNQ VIIKLNYFFY WICSXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXYG PAVDMWSVGC IFAELLYGIP ILNGNNEPEQ
201: LKKIFELCGS PDENNWPGVS KIPWYNNFKP AKPLERRVRE VFRTFDRHAL DLVDRMLTLD PSKRISAKDA LDAEYFWNDP LPCDPKSLPK YESSHDFQTK
301: KKRQQQRKNE EQAKRQKLQH PQQHARLPPI QHSGRAHPQH WHGPNHPTNN SQPTVPAGPS HHQYGRPHGL PGGPNRYPSS GNPNGGYNPN HGGQVGGYSS
401: APYPPQGRGQ PYGSGVPTTG PRGATSGYGV GPPNYSQSSQ YGGAAAGRGP NPMGVNRNQQ YGWQQ

Best Arabidopsis Sequence Match ( AT5G10270.1 )
(BLAST)

001: MAMASFGQLN LEEPPPIWGS RSVDCFEKLE QIGEGTYGQV YMAKEIKTGE IVALKKIRMD NEREGFPITA IREIKILKKL HHENVIQLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHTGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLHAKPI LPGKNEQEQL NKIFELCGSP DEKLWPGVSK MPWFNNFKPA RPLKRRVREF FRHFDRHALE
301: LLEKMLVLDP AQRISAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQQRQNEE AAKRQKLQHP PLQHSRLPPL QHGGQSHAAP HWPAGPNHPT
401: NNAPPQVPAG PSHNFYGKPR GPPGPNRYPP SGNQSGGYNQ SRGGYSSGSY PPQGRGAPYV AGPRGPSGGP YGVGPPNYTQ GGQYGGSGSS GRGQNQRNQQ
501: YGWQQ

Arabidopsis Description

CDKC-1CDKC [Source:UniProtKB/TrEMBL;Acc:A0A178UJP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.