CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0389700-01	Rice	nucleus	85.08	84.59
EER93534	Sorghum	cytosol	83.53	84.18
HORVU1Hr1G056380.1	Barley	nucleus	82.36	83.01
TraesCS1B01G254800.1	Wheat	nucleus	81.78	82.58
TraesCS1A01G243300.1	Wheat	nucleus	81.78	82.26
TraesCS1D01G243300.1	Wheat	nucleus	81.59	82.23
GSMUA_Achr5P05370_001	Banana	nucleus	81.78	81.78
KRG89779	Soybean	nucleus	77.71	77.12
KRH14656	Soybean	nucleus	76.55	76.55
PGSC0003DMT400015241	Potato	nucleus	75.0	76.48
KRH73489	Soybean	nucleus	76.36	76.36
Solyc06g073630.2.1	Tomato	nucleus	74.61	76.09
HORVU1Hr1G056390.2	Barley	plastid	72.09	72.8
VIT_00s0805g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	54.26	60.22
EES15089	Sorghum	cytosol	36.82	58.82
OQU83167	Sorghum	cytosol, mitochondrion, nucleus	32.36	37.19
KXG32500	Sorghum	plastid	38.18	35.37
OQU92600	Sorghum	nucleus	37.6	34.4
EES04133	Sorghum	cytosol, plasma membrane, plastid	35.08	32.5
KXG36890	Sorghum	plastid	35.85	32.34
EES02288	Sorghum	cytosol	39.15	29.19
EES15821	Sorghum	mitochondrion	35.66	28.48
EES05258	Sorghum	nucleus	37.02	27.48
OQU90194	Sorghum	plastid	36.43	26.55
KXG24243	Sorghum	nucleus	37.4	25.63
KXG23797	Sorghum	plastid	34.3	25.18
EER88844	Sorghum	vacuole	26.94	24.47
OQU76929	Sorghum	nucleus	30.23	21.37

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.3	MapMan:15.3.2.1.1	MapMan:18.4.3.1.3	Gene3D:3.30.200.20	EntrezGene:8076846
UniProt:C5YXH5	ncoils:Coil	EnsemblPlants:EES18167	ProteinID:EES18167	ProteinID:EES18167.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004693	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006468
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0051726	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF187	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	EnsemblPlantsGene:SORBI_3009G125000	SUPFAM:SSF56112	unigene:Sbi.201	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0001A88DB3
RefSeq:XP_002439737.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:47810835..47814674

Molecular Weight (calculated)

57444.2 Da

IEP (calculated)

9.622

GRAVY (calculated)

-0.821

Length

516 amino acids

Sequence
(BLAST)

001: MAVAGPGQLN LDESPSWGSR SVDCFEKLEQ IGEGTYGQVF MAKETETKEI VALKKIRMDN EREGFPITAI REIKILKKLH HQNVINLKEI VTSPGPERDG
101: QGKQIEGNKY KGSIYMVFEY MDHDLTGLSD RPAMRFSIPQ VKCYMRQLLM GLHYCHINQV LHRDIKGSNL LIDNHGILKL ADFGLARSFS NDHHANLTNR
201: VITLWYRPPE LLLGSTQYGP AVDMWSVGCI FAELLYGKPI LPGKNEPEQL TKIFELCGTP DEFNWPGVMK LPWYNNLKPP RVITRRVKEV FKHFDPHALD
301: LLEKMLTLDP SQRISAKDAL DADYFWTDPP PAEPHTLPKY ESSHEFQTKK KRQQQRQAEE AAKRQKVQHP HPHTRLPPIQ HPGQQHSQIR SGQPMGNPHA
401: PMASGPSHNY TKPRGTGGPN RYPQGGNQGG GYQNRGGQGG GYSSGSYPQQ GRGPPPYPGG GMGGTGGPRG GNGSGYGVGR PNYQQVGPYG VSGPGRGSNY
501: PQQGGSRNQQ QHGNWQ

Best Arabidopsis Sequence Match ( AT5G10270.1 )
(BLAST)

001: MAMASFGQLN LEEPPPIWGS RSVDCFEKLE QIGEGTYGQV YMAKEIKTGE IVALKKIRMD NEREGFPITA IREIKILKKL HHENVIQLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHTGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLHAKPI LPGKNEQEQL NKIFELCGSP DEKLWPGVSK MPWFNNFKPA RPLKRRVREF FRHFDRHALE
301: LLEKMLVLDP AQRISAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQQRQNEE AAKRQKLQHP PLQHSRLPPL QHGGQSHAAP HWPAGPNHPT
401: NNAPPQVPAG PSHNFYGKPR GPPGPNRYPP SGNQSGGYNQ SRGGYSSGSY PPQGRGAPYV AGPRGPSGGP YGVGPPNYTQ GGQYGGSGSS GRGQNQRNQQ
501: YGWQQ

Arabidopsis Description

CDKC-1CDKC [Source:UniProtKB/TrEMBL;Acc:A0A178UJP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.