CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14656	Soybean	nucleus	97.48	97.48
KRG89779	Soybean	nucleus	91.86	91.15
VIT_06s0009g01800.t01	Wine grape	nucleus	88.76	88.59
Solyc06g073630.2.1	Tomato	nucleus	82.36	83.99
PGSC0003DMT400015241	Potato	nucleus	81.98	83.6
GSMUA_Achr5P05370_001	Banana	nucleus	83.14	83.14
Zm00001d033847_P003	Maize	nucleus	81.4	82.35
Os01t0958000-01	Rice	plasma membrane	81.2	81.68
EER93534	Sorghum	cytosol	80.81	81.45
TraesCS3A01G498200.1	Wheat	nucleus	77.71	79.09
Zm00001d013371_P001	Maize	nucleus	80.81	78.98
TraesCSU01G058100.1	Wheat	nucleus	77.52	78.9
TraesCS3B01G561200.1	Wheat	nucleus	77.13	78.5
Os05t0389700-01	Rice	nucleus	78.68	78.23
HORVU1Hr1G056380.1	Barley	nucleus	76.16	76.76
TraesCS1B01G254800.1	Wheat	nucleus	75.78	76.52
EES18167	Sorghum	nucleus	76.36	76.36
TraesCS1A01G243300.1	Wheat	nucleus	75.78	76.22
TraesCS1D01G243300.1	Wheat	nucleus	75.58	76.17
HORVU3Hr1G110150.3	Barley	plastid	77.71	72.25
HORVU1Hr1G056390.2	Barley	plastid	67.05	67.71
KRH63826	Soybean	cytosol	25.58	36.16
KRH02197	Soybean	nucleus	37.79	35.71
KRH50926	Soybean	nucleus	37.4	35.22
KRG96918	Soybean	cytosol	38.76	34.97
KRH21021	Soybean	cytosol	36.43	34.81
KRH11268	Soybean	cytosol	36.05	34.38
KRH54127	Soybean	mitochondrion	36.63	33.81
KRH34013	Soybean	nucleus	37.79	33.62
KRH53817	Soybean	nucleus	31.98	33.54
KRG92786	Soybean	nucleus	37.6	33.45
KRH68662	Soybean	nucleus	38.37	33.45
KRH41090	Soybean	cytosol	35.66	33.15
KRH59494	Soybean	nucleus	26.36	32.61
KRH59775	Soybean	nucleus	34.69	32.25
KRH64126	Soybean	nucleus	31.01	32.0
KRG91692	Soybean	endoplasmic reticulum, plasma membrane	29.07	31.71
KRH27807	Soybean	nucleus	37.02	30.66
KRH77684	Soybean	nucleus	37.4	30.44
KRH18441	Soybean	nucleus	34.5	30.32
KRH06043	Soybean	nucleus	33.72	29.95
KRG93581	Soybean	plastid	33.72	29.69
KRH22087	Soybean	nucleus	40.7	29.49
KRH27243	Soybean	nucleus	40.12	29.24
KRH55283	Soybean	nucleus	40.12	29.15
KRH54601	Soybean	plastid	37.79	28.72
KRH63286	Soybean	nucleus	37.4	28.64
KRH56877	Soybean	nucleus, plastid	37.02	28.51
KRH26151	Soybean	nucleus	40.31	28.45
KRH03527	Soybean	nucleus, plastid	37.02	28.13
KRH25594	Soybean	nucleus	37.02	27.48
KRH44946	Soybean	nucleus	36.05	27.43
KRH26282	Soybean	nucleus	37.4	27.22
KRH01235	Soybean	nucleus, plastid	35.27	27.04
KRH55951	Soybean	nucleus	36.24	26.87
KRH26956	Soybean	nucleus	36.05	26.72
KRH35103	Soybean	nucleus	31.01	26.53
KRH22379	Soybean	nucleus	35.85	26.32

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100795971	MapMan:13.1.1.2.3	MapMan:15.3.2.1.1	MapMan:18.4.3.1.3	Gene3D:3.30.200.20
EMBL:ACUP02001278	EnsemblPlantsGene:GLYMA_02G276000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004693	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006468	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0051726	UniProt:I1JIS7
InterPro:IPR000719	EnsemblPlants:KRH73489	ProteinID:KRH73489	ProteinID:KRH73489.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF240	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002337049	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:45908624..45915394

Molecular Weight (calculated)

57408.4 Da

IEP (calculated)

9.645

GRAVY (calculated)

-0.828

Length

516 amino acids

Sequence
(BLAST)

001: MAIAAPGQLN VNESPIWGSR SVDCFEKLEQ IGEGTYGQVY MAKEIKTGEI VALKKIRMDN EREGFPITAI REIKILKKLH HENVIKLKEI VTSQGPEKDE
101: QGKPDGNKYK GGIYMVFEYM DHDLTGLADR PGMRFTVPQI KCYMRQLLTG LHYCHVNQVL HRDIKGSNLL IDNEGNLKLA DFGLARSFSN DQNANLTNRV
201: ITLWYRPPEL LLGTTKYGPA VDMWSVGCIF AELLQGKPIF PGKDEPEQLN KIYELCGAPN EVNWPGVSKI PYYNKFMPTR PMKRRLRDVF RHFDHHALEL
301: LEKMLTLDPS QRITAKDALD AEYFWTDPLP CDPKSLPKYE SSHEFQTKKK RQQQRQNEEM AKRQKMQHPQ PHTRLPPIQQ PGQHAQMRSG PNQPIHGSQP
401: QVSAGPTHHY GKPRGPSGGP GRYPPNGNPG GGYSHPNRAG QGGSGYGSGP YPPQGRGAPY GSNSMPGGGP RGSGASGYVG APNYPQQGGP YGGSAAGRGS
501: NMMGGNRNQQ QYGWQQ

Best Arabidopsis Sequence Match ( AT5G10270.1 )
(BLAST)

001: MAMASFGQLN LEEPPPIWGS RSVDCFEKLE QIGEGTYGQV YMAKEIKTGE IVALKKIRMD NEREGFPITA IREIKILKKL HHENVIQLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHTGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLHAKPI LPGKNEQEQL NKIFELCGSP DEKLWPGVSK MPWFNNFKPA RPLKRRVREF FRHFDRHALE
301: LLEKMLVLDP AQRISAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQQRQNEE AAKRQKLQHP PLQHSRLPPL QHGGQSHAAP HWPAGPNHPT
401: NNAPPQVPAG PSHNFYGKPR GPPGPNRYPP SGNQSGGYNQ SRGGYSSGSY PPQGRGAPYV AGPRGPSGGP YGVGPPNYTQ GGQYGGSGSS GRGQNQRNQQ
501: YGWQQ

Arabidopsis Description

CDKC-1CDKC [Source:UniProtKB/TrEMBL;Acc:A0A178UJP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.