CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55951	Soybean	nucleus	93.67	93.53
KRH22379	Soybean	nucleus	68.78	67.99
KRH26956	Soybean	nucleus	67.91	67.82
CDY54916	Canola	mitochondrion	27.34	57.58
PGSC0003DMT400047231	Potato	nucleus	56.83	55.09
Solyc07g053910.2.1	Tomato	nucleus, plastid	56.4	54.75
CDX99109	Canola	cytosol, mitochondrion, nucleus, plastid	41.44	54.65
PGSC0003DMT400034197	Potato	nucleus	51.65	53.26
Solyc10g008280.2.1	Tomato	nucleus	51.65	52.79
KRH27243	Soybean	nucleus	52.66	51.69
CDY13111	Canola	nucleus	45.47	51.47
KRH21021	Soybean	cytosol	39.86	51.3
KRH55283	Soybean	nucleus	52.09	50.99
KRH11268	Soybean	cytosol	39.57	50.83
KRH50926	Soybean	nucleus	40.0	50.73
KRH22087	Soybean	nucleus	51.94	50.7
CDY14916	Canola	nucleus	45.04	50.4
Bra036018.1-P	Field mustard	nucleus	45.04	50.4
KRH02197	Soybean	nucleus	39.57	50.37
KRH26151	Soybean	nucleus	52.66	50.07
CDY60604	Canola	nucleus	45.76	50.0
CDY20858	Canola	nucleus	45.76	49.77
Bra027540.1-P	Field mustard	nucleus	45.76	49.77
CDY33146	Canola	nucleus	45.76	49.77
CDY66485	Canola	nucleus	44.6	49.76
AT5G44290.3	Thale cress	nucleus	45.61	49.22
KRH54127	Soybean	mitochondrion	39.14	48.66
KRG96918	Soybean	cytosol	39.57	48.08
KRH59775	Soybean	nucleus	38.27	47.93
KRH34013	Soybean	nucleus	39.57	47.41
KRH41090	Soybean	cytosol	37.84	47.39
KRG92786	Soybean	nucleus	39.28	47.07
KRH68662	Soybean	nucleus	40.0	46.96
CDY10826	Canola	nucleus	35.83	46.63
KRH63826	Soybean	cytosol	24.46	46.58
AT4G22940.2	Thale cress	cytosol	35.97	44.64
KRH27807	Soybean	nucleus	40.0	44.62
KRH77684	Soybean	nucleus	40.58	44.48
Bra015260.1-P	Field mustard	mitochondrion, nucleus	45.76	43.98
CDX89871	Canola	mitochondrion, nucleus	45.76	43.98
AT1G03740.1	Thale cress	nucleus	46.19	43.38
KRH53817	Soybean	nucleus	30.65	43.29
KRH06043	Soybean	nucleus	36.12	43.2
KRH64126	Soybean	nucleus	30.79	42.8
CDY18179	Canola	nucleus	45.76	42.8
KRH59494	Soybean	nucleus	25.61	42.69
KRH26282	Soybean	nucleus	43.02	42.17
KRH54601	Soybean	plastid	41.01	41.97
KRH63286	Soybean	nucleus	40.58	41.84
KRG93581	Soybean	plastid	35.25	41.81
KRH18441	Soybean	nucleus	34.53	40.89
KRG91692	Soybean	endoplasmic reticulum, plasma membrane	27.77	40.8
KRH56877	Soybean	nucleus, plastid	39.28	40.75
KRH03527	Soybean	nucleus, plastid	39.71	40.65
CDY41270	Canola	cytosol	32.23	39.79
KRH35103	Soybean	nucleus	32.52	37.48
KRG89779	Soybean	nucleus	27.91	37.31
KRH73489	Soybean	nucleus	27.48	37.02
KRH14656	Soybean	nucleus	27.34	36.82
KRH44946	Soybean	nucleus	35.83	36.73
KRH01235	Soybean	nucleus, plastid	35.11	36.26
Bra013662.1-P	Field mustard	nucleus	34.96	33.84

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100814156	MapMan:18.4.3.1.8	Gene3D:3.30.200.20	EMBL:ACUP02007293	EnsemblPlantsGene:GLYMA_12G114000
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004693	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006468	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	GO:GO:0051726	UniProt:I1LS35	InterPro:IPR000719	EnsemblPlants:KRH25594
ProteinID:KRH25594	ProteinID:KRH25594.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF234	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000233C739	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:11250752..11257624

Molecular Weight (calculated)

77504.5 Da

IEP (calculated)

9.800

GRAVY (calculated)

-0.560

Length

695 amino acids

Sequence
(BLAST)

001: MGCICSKASA VEDSKEAVTE KFQSYSTRPS ELNVLRLNST RRVDEGGVKD VLIVGGHVKG SLIDKKANGS GQLYGDHDAK KKLEKLELTV VDHIGPGRVP
101: KAIEGEQVAA GWPAWLSSVA GEAIKGWIPR SANTFERLHK IGQGTYSTVY KARDVINQKF VALKKVRFDN LDPESVKFMT REIHVLRRLD HPNIIKLEGL
201: ITSQMSRSLY LVFEYMEHDL TGLASNPDIK FSEPQLKCYM RQLLSGLDHC HSHGVLHRDI KGSNLLIDNN GVLKIADFGL ASFYDPQHNV PLTSRVVTLW
301: YRPPELLLGA NHYGVAVDLW STGCILGELY TGRPILPGKT EVEQLHRIFK LCGSPSDDYW LKSRLSHSTV FRPPHHYRRC VADTFKDYPS TAVKLIETLL
401: SVEPAHRGTA AAALESEFFM SEPLPCDPSS LPKYVPSKEI DAKLRDEAVR QGVVGGREQK VASGVRQEKG HRANVTAKDN ADPGLAVQQG HCSSSRNQSE
501: LSNPHRGSVS GILVFPHKQS EKEMNDNFSG HLYKRPSHSG PLVPGSVWAK GRKEVDDVPP VSNRVNLSKL SGLVASRTFS EDQEVKPVHS NHRKPIEVRK
601: SVESTNGSES RRRHDQKQIV DLNQIESRRV PAEKSTPGGR ESMGNKIYLS GPLMVSSSNM DQMLKEHDRK IQEFSRRARI DKSRARGEKV FAQRK

Best Arabidopsis Sequence Match ( AT1G03740.1 )
(BLAST)

001: MGCVNSRHRP FRRKSTTLKE SSEEKRSSRI DSSRRIDDWI QPEDGFDRLS NSGDAKVRLI ESEMFSTSRC HDHQIGKILE NPATVAHMDR VVHDQELRRA
101: SSAVVDSDLD IDPKVVKAKL DRWNSKDSKV RLIESEKLSS SMFSEHHQIE KGVEKPEVEA SVRVVHRELK RGSSIVSPKD AERKQVAAGW PSWLVSVAGE
201: SLVDWAPRRA NTFEKLEKIG QGTYSSVYRA RDLLHNKIVA LKKVRFDLND MESVKFMARE IIVMRRLDHP NVLKLEGLIT APVSSSLYLV FEYMDHDLLG
301: LSSLPGVKFT EPQVKCYMRQ LLSGLEHCHS RGVLHRDIKG SNLLIDSKGV LKIADFGLAT FFDPAKSVSL TSHVVTLWYR PPELLLGASH YGVGVDLWST
401: GCILGELYAG KPILPGKTEV EQLHKIFKLC GSPTENYWRK QKLPSSAGFK TAIPYRRKVS EMFKDFPASV LSLLETLLSI DPDHRSSADR ALESEYFKTK
501: PFACDPSNLP KYPPSKEIDA KMRDEAKRQQ PMRAEKQERQ DSMTRISHER KFVPPVKANN SLSMTMEKQY KDLRSRNDSF KSFKEERTPH GPVPDYQNMQ
601: HNRNNQTGVR ISHSGPLMSN RNMAKSTMHV KENALPRYPP ARVNPKMLSG SVSSKTLLER QDQPVTNQRR RDRRAYNRAD TMDSRHMTAP IDPSWYNPSD
701: SKIYMSGPLL AQPSRVDQML EEHDRQLQEF NRQALKTPQG

Arabidopsis Description

F21B7.34 [Source:UniProtKB/TrEMBL;Acc:Q9LR53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.