CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25594	Soybean	nucleus	93.53	93.67
KRH26956	Soybean	nucleus	67.96	67.96
KRH22379	Soybean	nucleus	68.39	67.71
CDY54916	Canola	mitochondrion	27.01	56.97
PGSC0003DMT400047231	Potato	nucleus	56.61	54.95
CDX99109	Canola	cytosol, mitochondrion, nucleus, plastid	41.52	54.84
Solyc07g053910.2.1	Tomato	nucleus, plastid	56.18	54.61
Solyc10g008280.2.1	Tomato	nucleus	51.29	52.5
PGSC0003DMT400034197	Potato	nucleus	50.72	52.37
KRH27243	Soybean	nucleus	52.87	51.98
KRH21021	Soybean	cytosol	40.23	51.85
CDY13111	Canola	nucleus	45.55	51.63
KRH55283	Soybean	nucleus	52.59	51.55
KRH11268	Soybean	cytosol	39.94	51.39
KRH02197	Soybean	nucleus	40.23	51.28
KRH50926	Soybean	nucleus	40.37	51.28
KRH22087	Soybean	nucleus	52.16	50.98
KRH26151	Soybean	nucleus	53.16	50.62
CDY14916	Canola	nucleus	44.83	50.24
Bra036018.1-P	Field mustard	nucleus	44.83	50.24
CDY60604	Canola	nucleus	45.83	50.16
CDY20858	Canola	nucleus	45.83	49.92
Bra027540.1-P	Field mustard	nucleus	45.83	49.92
CDY33146	Canola	nucleus	45.83	49.92
CDY66485	Canola	nucleus	44.4	49.6
AT5G44290.3	Thale cress	nucleus	45.83	49.53
KRH54127	Soybean	mitochondrion	39.66	49.37
KRH59775	Soybean	nucleus	38.79	48.65
KRG96918	Soybean	cytosol	39.94	48.6
KRH41090	Soybean	cytosol	38.65	48.47
KRH34013	Soybean	nucleus	40.23	48.28
KRG92786	Soybean	nucleus	40.09	48.1
KRH68662	Soybean	nucleus	40.52	47.64
KRH63826	Soybean	cytosol	24.43	46.58
CDY10826	Canola	nucleus	35.49	46.25
KRH53817	Soybean	nucleus	31.61	44.72
KRH27807	Soybean	nucleus	39.94	44.62
Bra015260.1-P	Field mustard	mitochondrion, nucleus	46.12	44.4
AT4G22940.2	Thale cress	cytosol	35.63	44.29
CDX89871	Canola	mitochondrion, nucleus	45.98	44.26
KRH77684	Soybean	nucleus	40.09	44.01
KRH64126	Soybean	nucleus	31.61	44.0
KRH59494	Soybean	nucleus	26.01	43.41
KRH06043	Soybean	nucleus	36.21	43.37
AT1G03740.1	Thale cress	nucleus	45.98	43.24
CDY18179	Canola	nucleus	45.69	42.8
KRH26282	Soybean	nucleus	43.1	42.31
KRG91692	Soybean	endoplasmic reticulum, plasma membrane	28.16	41.44
KRH63286	Soybean	nucleus	40.09	41.39
KRH54601	Soybean	plastid	40.37	41.38
KRG93581	Soybean	plastid	34.77	41.3
KRH18441	Soybean	nucleus	34.2	40.55
KRH56877	Soybean	nucleus, plastid	38.65	40.15
KRH03527	Soybean	nucleus, plastid	39.08	40.06
CDY41270	Canola	cytosol	31.75	39.25
KRH35103	Soybean	nucleus	32.61	37.65
KRG89779	Soybean	nucleus	27.44	36.73
KRH44946	Soybean	nucleus	35.63	36.58
KRH01235	Soybean	nucleus, plastid	35.06	36.26
KRH14656	Soybean	nucleus	26.87	36.24
KRH73489	Soybean	nucleus	26.87	36.24
Bra013662.1-P	Field mustard	nucleus	34.77	33.7

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100807590	MapMan:18.4.3.1.8	Gene3D:3.30.200.20	EMBL:ACUP02004071	EnsemblPlantsGene:GLYMA_06G292200
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004693	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006468	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	GO:GO:0051726	UniProt:I1KF16	InterPro:IPR000719	EnsemblPlants:KRH55951
ProteinID:KRH55951	ProteinID:KRH55951.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF234	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002339A20	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:48100480..48106268

Molecular Weight (calculated)

77690.9 Da

IEP (calculated)

10.136

GRAVY (calculated)

-0.594

Length

696 amino acids

Sequence
(BLAST)

001: MGCICSKSSA IEDSKESVTK KFQSYSTRPS ELNVLRLNST RRVDEGGVKD VLIDGGHVKG SLIERKANGS GQLYGDHHDV KKKLEKPGLT VVDHIGPGRV
101: PKAIEGEQVA AGWPAWLSSV AGEAIKGWIP RSANTFERLH KIGQGTYSTV YKARDVINQK FVALKKVRFD NLDPESVKFM AREIHVLRRL DHPNIIKLEG
201: LITSRMSRSL YLVFEYMEHD LTGLASNPDI KFSEPQLKCY MQQLLSGLDH CHSHGVLHRD IKGSNLLIDN NGVLKIADFG LASSYDPHHN VPLTSRVVTL
301: WYRPPELLLG ANHYGVAVDL WSTGCILGEL YTGRPILPGK TEVEQLHRIF KLCGSPSDDY WLKLRLSHST VFRPPHHYRK CVADTFKDYP STAVKLIETL
401: LSVEPAHRGS AAAALKSEFF TSEPLPCDPS SLPKYAPSKE IDAKLRDEAR RQRAVGGREQ KVASGVGQEK GHRANVATKD NADPGLLVQQ GRYSSSRNQS
501: ELSNPHRGTV SGILVFPHKQ SEKEMDNNFS GHIYKRPSHS GPLVPGSVWA KGRKEVDDVP PVSNRVNLSK LSGLVASRTL PEDQEVKPVH LHHRKPIEVR
601: KSVESTNGSE SRRRQDQKRI VDLNQIESRR VAAEKSTPGG RESMGNKIYL SGPLMVSSSN MDQMLKDHDR KIQEFSRRAR IDKSRARGEK VRALRK

Best Arabidopsis Sequence Match ( AT1G03740.1 )
(BLAST)

001: MGCVNSRHRP FRRKSTTLKE SSEEKRSSRI DSSRRIDDWI QPEDGFDRLS NSGDAKVRLI ESEMFSTSRC HDHQIGKILE NPATVAHMDR VVHDQELRRA
101: SSAVVDSDLD IDPKVVKAKL DRWNSKDSKV RLIESEKLSS SMFSEHHQIE KGVEKPEVEA SVRVVHRELK RGSSIVSPKD AERKQVAAGW PSWLVSVAGE
201: SLVDWAPRRA NTFEKLEKIG QGTYSSVYRA RDLLHNKIVA LKKVRFDLND MESVKFMARE IIVMRRLDHP NVLKLEGLIT APVSSSLYLV FEYMDHDLLG
301: LSSLPGVKFT EPQVKCYMRQ LLSGLEHCHS RGVLHRDIKG SNLLIDSKGV LKIADFGLAT FFDPAKSVSL TSHVVTLWYR PPELLLGASH YGVGVDLWST
401: GCILGELYAG KPILPGKTEV EQLHKIFKLC GSPTENYWRK QKLPSSAGFK TAIPYRRKVS EMFKDFPASV LSLLETLLSI DPDHRSSADR ALESEYFKTK
501: PFACDPSNLP KYPPSKEIDA KMRDEAKRQQ PMRAEKQERQ DSMTRISHER KFVPPVKANN SLSMTMEKQY KDLRSRNDSF KSFKEERTPH GPVPDYQNMQ
601: HNRNNQTGVR ISHSGPLMSN RNMAKSTMHV KENALPRYPP ARVNPKMLSG SVSSKTLLER QDQPVTNQRR RDRRAYNRAD TMDSRHMTAP IDPSWYNPSD
701: SKIYMSGPLL AQPSRVDQML EEHDRQLQEF NRQALKTPQG

Arabidopsis Description

F21B7.34 [Source:UniProtKB/TrEMBL;Acc:Q9LR53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.