Factsheet for Solyc06g073630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015241	Potato	nucleus	98.42	98.42
VIT_06s0009g01800.t01	Wine grape	nucleus	86.56	84.72
KRG89779	Soybean	nucleus	85.38	83.08
KRH14656	Soybean	nucleus	84.39	82.75
KRH73489	Soybean	nucleus	83.99	82.36
GSMUA_Achr5P05370_001	Banana	nucleus	82.21	80.62
Zm00001d033847_P003	Maize	nucleus	81.03	80.39
EER93534	Sorghum	cytosol	81.03	80.08
Os01t0958000-01	Rice	plasma membrane	81.03	79.92
TraesCSU01G058100.1	Wheat	nucleus	78.26	78.11
TraesCS3A01G498200.1	Wheat	nucleus	78.26	78.11
TraesCS3B01G561200.1	Wheat	nucleus	77.67	77.51
Zm00001d013371_P001	Maize	nucleus	80.63	77.27
Os05t0389700-01	Rice	nucleus	78.85	76.88
HORVU1Hr1G056380.1	Barley	nucleus	76.09	75.2
EES18167	Sorghum	nucleus	76.09	74.61
TraesCS1B01G254800.1	Wheat	nucleus	75.3	74.56
Solyc04g056280.2.1	Tomato	nucleus	75.3	74.41
TraesCS1D01G243300.1	Wheat	nucleus	75.3	74.41
TraesCS1A01G243300.1	Wheat	nucleus	75.3	74.27
HORVU3Hr1G110150.3	Barley	plastid	78.06	71.17
HORVU1Hr1G056390.2	Barley	plastid	66.6	65.95
Solyc01g098160.2.1	Tomato	nucleus	38.93	34.26
Solyc03g097690.2.1	Tomato	cytosol	37.75	33.45
Solyc01g067640.2.1	Tomato	nucleus	37.94	33.1
Solyc04g051460.2.1	Tomato	cytosol	30.04	32.2
Solyc11g045610.1.1	Tomato	nucleus	37.55	29.69
Solyc07g063130.2.1	Tomato	plastid	40.51	28.39
Solyc07g053910.2.1	Tomato	nucleus, plastid	39.92	28.21
Solyc04g071920.1.1	Tomato	nucleus	31.62	28.12
Solyc10g008280.2.1	Tomato	nucleus	37.55	27.94
Solyc06g064660.2.1	Tomato	endoplasmic reticulum, plasma membrane	37.35	27.55
Solyc01g103350.2.1	Tomato	nucleus	39.53	27.32
Solyc02g088330.2.1	Tomato	cytosol, nucleus, plastid	34.59	26.64
Solyc03g115660.2.1	Tomato	nucleus	34.19	25.04

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.3	MapMan:15.3.2.1.1	MapMan:18.4.3.1.3	Gene3D:3.30.200.20	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004693	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006468
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0051726	InterPro:IPR000719	UniProt:K4C982	InterPro:Kinase-like_dom_sf	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF187	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc06g073630.2	EnsemblPlants:Solyc06g073630.2.1
UniParc:UPI0002765F98	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:45423894..45429875

Molecular Weight (calculated)

56532.1 Da

IEP (calculated)

9.643

GRAVY (calculated)

-0.828

Length

506 amino acids

Sequence
(BLAST)

001: MAIAAPEQLN LTEAPTWGSR TVDCFEKLEQ IGEGTYGQVY MAKEIRTGEI VALKKIRMDN EREGFPITAI REIKILKKLH HENVIDLKEI VTSPGREKDD
101: QGRPDGNKYK GGIYMVFEYM DHDLTGLADR PGMRFSVPQI KCYMRQLLTG LHYCHVNQVL HRDIKGSNLL IDNKGNLKLA DFGLARSFSN DHNANLTNRV
201: ITLWYRPPEL LLGTTKYGPA VDMWSVGCIF AELLHGKPIF PGKDEPEQLN KIFELCGSPD EVNWPGVSKI PWYNNFKPSR PLKRRLREVF RHFDRHALEL
301: LDKMLTLDPS QRISAKDALD AEYFWTDPLP CDPKSLPTYE ASHEFQTKKK RQQQRQHEEA AKRQKLHHQQ QHGRLPPVQQ SGQGHGQMRP GPNPPMHASH
401: PQAAGGPSHH YAKPHGPPAG PGRYLAGGNP SGGYGHPTRG QGGAYGSGRY PPQGRGTQYS SGGMPGGSGP RGVGGPNYPH GAPYGSSGTG RGSNVNRNQQ
501: QYNWQQ

Best Arabidopsis Sequence Match ( AT5G10270.1 )
(BLAST)

001: MAMASFGQLN LEEPPPIWGS RSVDCFEKLE QIGEGTYGQV YMAKEIKTGE IVALKKIRMD NEREGFPITA IREIKILKKL HHENVIQLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHTGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLHAKPI LPGKNEQEQL NKIFELCGSP DEKLWPGVSK MPWFNNFKPA RPLKRRVREF FRHFDRHALE
301: LLEKMLVLDP AQRISAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQQRQNEE AAKRQKLQHP PLQHSRLPPL QHGGQSHAAP HWPAGPNHPT
401: NNAPPQVPAG PSHNFYGKPR GPPGPNRYPP SGNQSGGYNQ SRGGYSSGSY PPQGRGAPYV AGPRGPSGGP YGVGPPNYTQ GGQYGGSGSS GRGQNQRNQQ
501: YGWQQ

Arabidopsis Description

CDKC-1CDKC [Source:UniProtKB/TrEMBL;Acc:A0A178UJP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.