Factsheet for Solyc01g098160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54610.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT1G54610.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT1G54610.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT1G54610.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT1G54610.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT1G54610.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT1G54610.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT1G54610.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT1G54610.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT1G54610.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT1G54610.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT1G54610.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT1G54610.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT1G54610.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT1G54610.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT1G54610.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT1G54610.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT3G05050.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT3G05050.1	Solyc06g053930.2.1	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057839	Potato	cytosol	97.74	97.57
Os07t0668000-00	Rice	cytosol, plasma membrane	4.7	87.1
KRH34013	Soybean	nucleus	73.39	72.76
KRG96918	Soybean	cytosol	72.35	72.73
TraesCS2D01G120200.1	Wheat	nucleus	60.17	72.69
KRH68662	Soybean	nucleus	73.39	71.28
Zm00001d047482_P001	Maize	nucleus	67.83	71.17
VIT_14s0030g01260.t01	Wine grape	cytosol, nucleus, plastid	72.0	71.13
KRG92786	Soybean	nucleus	71.48	70.86
Solyc01g067640.2.1	Tomato	nucleus	71.13	70.52
Bra027966.1-P	Field mustard	nucleus	68.17	69.63
OQU92600	Sorghum	nucleus	68.17	69.5
CDX95237	Canola	nucleus	68.87	69.35
Zm00001d029143_P003	Maize	nucleus	65.91	69.29
CDY67158	Canola	plastid	68.17	69.26
TraesCS4B01G151800.1	Wheat	nucleus	65.74	68.98
TraesCS2A01G119300.1	Wheat	nucleus	67.48	68.55
TraesCS4D01G151100.1	Wheat	nucleus	65.74	68.23
TraesCS4A01G142300.1	Wheat	nucleus	65.57	68.05
KXG36890	Sorghum	plastid	67.65	68.01
TraesCS2B01G139000.1	Wheat	nucleus	67.48	67.95
Zm00001d022499_P001	Maize	plastid	67.3	67.78
Zm00001d007111_P001	Maize	plastid	67.48	67.71
AT1G54610.1	Thale cress	nucleus	67.3	67.66
HORVU4Hr1G048510.1	Barley	cytosol	58.96	61.19
HORVU2Hr1G020680.2	Barley	cytosol	51.83	60.69
Solyc03g097690.2.1	Tomato	cytosol	58.78	59.19
CDX86178	Canola	cytosol, nucleus, plastid	57.74	58.76
Bra009977.1-P	Field mustard	cytosol, nucleus, plastid	57.74	58.76
CDX80672	Canola	cytosol, plastid	58.26	58.57
Bra040637.1-P	Field mustard	plastid	58.78	58.48
CDY18783	Canola	plastid	58.78	58.48
AT3G05050.1	Thale cress	nucleus, plastid	59.83	58.01
CDY53230	Canola	nucleus, plastid	58.61	57.71
CDY41930	Canola	cytosol	57.91	56.73
Bra039466.1-P	Field mustard	plastid	57.39	56.6
CDY27801	Canola	cytosol	57.39	56.6
Solyc11g045610.1.1	Tomato	nucleus	51.65	46.41
Solyc04g051460.2.1	Tomato	cytosol	37.39	45.55
Solyc07g063130.2.1	Tomato	plastid	56.0	44.6
Solyc07g053910.2.1	Tomato	nucleus, plastid	53.74	43.16
Solyc06g064660.2.1	Tomato	endoplasmic reticulum, plasma membrane	50.78	42.57
Solyc10g008280.2.1	Tomato	nucleus	50.09	42.35
Solyc01g103350.2.1	Tomato	nucleus	52.52	41.26
Solyc04g071920.1.1	Tomato	nucleus	40.35	40.77
Solyc02g088330.2.1	Tomato	cytosol, nucleus, plastid	44.87	39.27
Solyc04g056280.2.1	Tomato	nucleus	34.96	39.26
Solyc06g073630.2.1	Tomato	nucleus	34.26	38.93
Solyc03g115660.2.1	Tomato	nucleus	46.43	38.64

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.1.8	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004693	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006468	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0051726
InterPro:IPR000719	UniProt:K4B0K3	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF319	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc01g098160.2	EnsemblPlants:Solyc01g098160.2.1	UniParc:UPI00027683F8	SEG:seg

Description

No Description!

Coordinates

chr1:-:88730993..88740120

Molecular Weight (calculated)

64342.4 Da

IEP (calculated)

9.288

GRAVY (calculated)

-0.717

Length

575 amino acids

Sequence
(BLAST)

001: MGCVLGREAS SGLVHNGREE KREGAHYEKK SQSISAESTE TFEVKGAENV TVDTEVVEAD EGDETKKDDK TEHDGKSRKE KRRSKPDPRL SNPPKHKHGE
101: QVAAGWPSWL SAHVGEAIDG WLPRRADTFE KIDKIGQGTY SNVYKARDTV TGKIVALKKV RFDNLEPESV RFMAREIIIL RQLDHPNVIK LEGLVTSRMS
201: CSLYLVFEYM DHDLAGLAAS PEIKFTEAQV KCYMHQLLSG LEHCHNRHVL HRDIKGSNLL LDNSGILRIA DFGLATIFDP SHKHQMTSRV VTLWYRPPEL
301: LLGATDYGVG IDLWSAGCIL AELLAGKPIM PGRTEVEQLH KIYKLCGSPS EEYWKKSKLP NATLFKPREP YRRCIKETFK DFPQSSLPLI DTLLAIDPAE
401: RKTATDALRS EFFNTEPYAC DPSSLPKYPP TKEMDAKRRD DEARRLRAAN KATGDGAKRV RHRERTRAGP APDANAENQA NIDRRRLITH ANAKSKSEKF
501: PPPHQDGGLG VPLGASHHID PSLVPPDVPF SSTSFTYSKE PVQNWSGPLV EPASAGGRRK KHTAGDAKKH LSKRR

Best Arabidopsis Sequence Match ( AT1G54610.1 )
(BLAST)

001: MGCVFGREAA TTTTAEAKQA KSSKASSGVV VVGESSVTKS NGVIADDVEK KKNEEANGDK ERKSSKGDRR RSTKPNPRLS NPSKHWRGEQ VAAGWPSWLS
101: DACGEALNGW VPRKADTFEK IDKIGQGTYS NVYKAKDMLT GKIVALKKVR FDNLEPESVK FMAREILVLR RLDHPNVVKL EGLVTSRMSC SLYLVFQYMD
201: HDLAGLASSP VVKFSESEVK CLMRQLISGL EHCHSRGVLH RDIKGSNLLI DDGGVLKIAD FGLATIFDPN HKRPMTSRVV TLWYRAPELL LGATDYGVGI
301: DLWSAGCILA ELLAGRPIMP GRTEVEQLHK IYKLCGSPSE DYWKKGKFTH GAIYKPREPY KRSIRETFKD FPPSSLPLID ALLSIEPEDR QTASAALKSE
401: FFTSEPYACE PADLPKYPPS KEIDAKRRDE ETRRQRAASK AQGDGARKNR HRDRSNRALP APEANAELQS NVDRRRLITH ANAKSKSEKF PPPHQDGGAM
501: GVPLGASQHI DPTFIPRDMV PSFTSSSFNF SKDEPPTQVQ TWSGPLGHPI TGVSRKKKDN TKSSKGKRAV VA

Arabidopsis Description

Probable serine/threonine-protein kinase At1g54610 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.