Factsheet for Solyc04g056280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g005680.2.1
Solyc03g118540.2.1
Solyc04g076410.2.1
Solyc06g009060.2.1
Solyc06g053480.2.1
Solyc06g053920.2.1
Solyc06g068930.1.1
Solyc07g032480.2.1
Solyc09g075090.1.1
Solyc09g090520.2.1
Solyc12g077540.1.1
Solyc12g087990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10270.1	Solyc12g077540.1.1	AT1G13450.1	12678503
AT5G10270.1	Solyc07g032480.2.1	AT1G27630.1	12678503
AT5G10270.1	Solyc03g118540.2.1	AT3G17860.1	21798944
AT5G10270.1	Solyc06g068930.1.1	AT3G17860.1	21798944
AT5G10270.1	Solyc03g005680.2.1	AT4G14300.1	12678503
AT5G10270.1	Solyc09g090520.2.1	AT4G14300.1	12678503
AT5G64960.1	Solyc06g009060.2.1	AT1G02840.1	18208522
AT5G64960.1	Solyc09g075090.1.1	AT1G02840.1	18208522
AT5G64960.1	Solyc07g032480.2.1	AT1G27630.1	12678503
AT5G64960.1	Solyc06g053480.2.1	AT2G43710.1	20706207
AT5G64960.1	Solyc06g053920.2.1	AT3G55760.1	20706207
AT5G64960.1	Solyc04g076410.2.1	AT4G24500.1	21798944
AT5G64960.1	Solyc12g087990.1.1	AT4G24500.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012392_P001	Maize	cytosol	33.01	82.84
VIT_07s0141g00280.t01	Wine grape	cytosol	39.65	81.85
AT5G10270.1	Thale cress	nucleus	76.56	77.62
AT5G64960.1	Thale cress	nucleus	77.34	77.19
CDY72385	Canola	cytosol	25.2	76.79
CDY33994	Canola	nucleus	76.17	75.44
Solyc06g073630.2.1	Tomato	nucleus	74.41	75.3
Bra031892.1-P	Field mustard	nucleus	76.17	75.29
CDY31293	Canola	nucleus	76.17	75.29
CDX96988	Canola	nucleus	74.02	74.46
Bra009045.1-P	Field mustard	nucleus	73.83	74.26
CDX69849	Canola	nucleus	73.83	74.26
CDY56227	Canola	nucleus	71.09	71.37
Bra028333.1-P	Field mustard	nucleus	70.7	71.26
CDY18101	Canola	cytosol	61.33	68.11
Bra024341.1-P	Field mustard	cytosol	47.66	61.31
EES15089	Sorghum	cytosol	37.11	58.82
CDY08835	Canola	cytosol	48.44	57.94
Os08t0453800-00	Rice	endoplasmic reticulum, plasma membrane	34.96	55.94
CDY14526	Canola	cytosol	62.3	44.43
Solyc01g098160.2.1	Tomato	nucleus	39.26	34.96
Solyc03g097690.2.1	Tomato	cytosol	37.5	33.63
Solyc01g067640.2.1	Tomato	nucleus	38.09	33.62
Solyc04g051460.2.1	Tomato	cytosol	30.08	32.63
Solyc11g045610.1.1	Tomato	nucleus	39.26	31.41
Solyc07g063130.2.1	Tomato	plastid	41.41	29.36
Solyc06g064660.2.1	Tomato	endoplasmic reticulum, plasma membrane	38.87	29.01
Solyc04g071920.1.1	Tomato	nucleus	32.03	28.82
Solyc10g008280.2.1	Tomato	nucleus	37.3	28.09
Solyc07g053910.2.1	Tomato	nucleus, plastid	39.26	28.07
Solyc02g088330.2.1	Tomato	cytosol, nucleus, plastid	35.55	27.7
Solyc01g103350.2.1	Tomato	nucleus	39.45	27.6
Solyc03g115660.2.1	Tomato	nucleus	34.57	25.62
Os01t0201000-01	Rice	plasma membrane	2.15	8.59

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.3	MapMan:15.3.2.1.1	MapMan:18.4.3.1.3	Gene3D:3.30.200.20	EMBL:AJ294903
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004693	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006468	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0051726	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF240
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	UniProt:Q93X47	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
EnsemblPlantsGene:Solyc04g056280.2	EnsemblPlants:Solyc04g056280.2.1	UniParc:UPI00000A6B5D	SEG:seg	:	:

Description

Cyclin dependent kinase C [Source:UniProtKB/TrEMBL;Acc:Q93X47]

Coordinates

chr4:+:53965673..53978208

Molecular Weight (calculated)

57150.8 Da

IEP (calculated)

9.224

GRAVY (calculated)

-0.768

Length

512 amino acids

Sequence
(BLAST)

001: MAVAAFGQLN LDESPLWGSR SIECFEKLEQ IGEGTYGQVY MARDKQTGEI VALKKIRMDN EKEGFPITAI REIKILKKLQ HENVIKLLEI VTSQGPEEDE
101: PEKLGIDSNK YKGNIYMVFE YMDHDLTGLA DRPGLRFTIP QIKCYMKQLL TGLHYCHINQ VLHRDIKGSN LLIDNEGNLK LADFGLARSF SGDHNANLTN
201: RVITLWYRPP ELLLGATKYG PAVDMWSVGC IFAELLFGKP ILPGKNEPEQ LNKIFELCGT PDEINWPGVS KIPWYSKFKP ARPMKRRVRE VFRHFDRHAL
301: DLLDKMLNLD PSQRICAKDA LDGEYFWTDP LPCDPRSLPK YESSHEFQTK KKRQQQRQNE EMAKRHKLQH PQQHSRLPPI QQPGHSQHWG GSTHQMSNSQ
401: PAISAGAGHH QFGKPRGTGG SNRYPPGGNP GGGYYQDRGA QGGGYSSGAY PPQGRAPPFP GSGLAPSGPR GPSGGYGGPP NYSQSGQYGG SGAGRGSNQM
501: SGNRNQQYGW QQ

Best Arabidopsis Sequence Match ( AT5G10270.1 )
(BLAST)

001: MAMASFGQLN LEEPPPIWGS RSVDCFEKLE QIGEGTYGQV YMAKEIKTGE IVALKKIRMD NEREGFPITA IREIKILKKL HHENVIQLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHTGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLHAKPI LPGKNEQEQL NKIFELCGSP DEKLWPGVSK MPWFNNFKPA RPLKRRVREF FRHFDRHALE
301: LLEKMLVLDP AQRISAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQQRQNEE AAKRQKLQHP PLQHSRLPPL QHGGQSHAAP HWPAGPNHPT
401: NNAPPQVPAG PSHNFYGKPR GPPGPNRYPP SGNQSGGYNQ SRGGYSSGSY PPQGRGAPYV AGPRGPSGGP YGVGPPNYTQ GGQYGGSGSS GRGQNQRNQQ
501: YGWQQ

Arabidopsis Description

CDKC-1CDKC [Source:UniProtKB/TrEMBL;Acc:A0A178UJP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.