Factsheet for Solyc06g053480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042118	Potato	plastid	97.73	97.73
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	35.77	86.59
VIT_05s0094g00750.t01	Wine grape	plastid	69.52	85.45
KRH71270	Soybean	endoplasmic reticulum, nucleus	84.13	85.42
Bra000321.1-P	Field mustard	plastid	84.89	84.67
CDX83464	Canola	plastid	84.89	84.67
CDX79807	Canola	plastid	85.14	84.29
AT2G43710.1	Thale cress	plastid	85.14	84.29
CDY44250	Canola	plastid	84.63	84.21
CDY17916	Canola	plastid	84.38	83.96
Bra004778.1-P	Field mustard	plastid	84.13	83.29
KRH50195	Soybean	plastid	83.88	82.84
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	32.75	82.28
VIT_12s0034g00180.t01	Wine grape	cytosol	21.41	80.19
Solyc03g063110.2.1	Tomato	plastid	78.09	78.88
TraesCS3B01G463000.1	Wheat	plastid	77.83	78.63
Zm00001d012033_P002	Maize	mitochondrion	77.58	78.57
TraesCS3D01G421700.1	Wheat	plastid	77.58	78.57
Os04t0379900-01	Rice	plastid	76.57	77.95
EES04113	Sorghum	plastid	77.83	77.83
Os01t0919900-01	Rice	plastid	78.34	77.75
TraesCS2A01G280700.2	Wheat	plastid	76.57	77.55
TraesCS2B01G298000.1	Wheat	plastid	76.32	77.3
TraesCS2D01G279500.2	Wheat	golgi, plastid	76.32	77.3
EES10606	Sorghum	plastid	75.82	76.79
Solyc11g008680.1.1	Tomato	plastid	75.82	76.59
Zm00001d025170_P001	Maize	plastid	74.81	75.77
GSMUA_Achr7P22860_001	Banana	plastid	68.77	75.62
Zm00001d004019_P001	Maize	plastid	74.56	75.51
Zm00001d042344_P002	Maize	plastid	78.09	75.24
GSMUA_Achr8P08750_001	Banana	plastid	65.74	73.94
TraesCS5A01G123600.2	Wheat	plastid	69.77	71.95
TraesCS5D01G131500.1	Wheat	plastid	69.02	71.73
HORVU5Hr1G039730.1	Barley	plastid	69.27	71.43
TraesCS5B01G123200.1	Wheat	plastid	69.27	71.43
VIT_12s0034g00190.t01	Wine grape	extracellular	29.47	70.06
TraesCS5D01G548700.1	Wheat	plastid	68.01	69.05
HORVU2Hr1G068670.2	Barley	mitochondrion, plastid	76.57	68.31
TraesCS5B01G539600.1	Wheat	plastid	66.75	67.77
HORVU5Hr1G123110.1	Barley	mitochondrion, plastid	67.76	67.42
HORVU3Hr1G094050.3	Barley	plastid	78.34	66.88
TraesCS4A01G326700.1	Wheat	plastid	68.26	66.26
KXG30261	Sorghum	plastid	68.77	65.62
Solyc06g059700.2.1	Tomato	cytosol	23.43	65.49
GSMUA_Achr5P25160_001	Banana	plastid	63.22	63.71
TraesCS3A01G426800.3	Wheat	plastid	76.83	63.28
Solyc06g034170.1.1	Tomato	peroxisome, plastid	17.13	62.96
Zm00001d050552_P001	Maize	plastid	68.77	62.05
Os02t0504800-01	Rice	plastid	49.87	61.49
Solyc01g009960.2.1	Tomato	plastid	46.35	61.13
Solyc06g054670.1.1	Tomato	plastid	54.16	56.73
Solyc06g059710.2.1	Tomato	plastid	52.9	54.26
Solyc06g059720.2.1	Tomato	plastid	52.39	53.75

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:FADS-2_CS	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0002213
GO:GO:0003674	GO:GO:0003824	GO:GO:0004768	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0009507	GO:GO:0009534
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987
GO:GO:0016491	GO:GO:0042742	GO:GO:0045300	GO:GO:0046872	GO:GO:0051607	GO:GO:0055114
InterPro:IPR012348	UniProt:K4C635	PFAM:PF03405	PIRSF:PIRSF000346	ScanProsite:PS00574	PANTHER:PTHR31155
PANTHER:PTHR31155:SF11	InterPro:RNR-like	SUPFAM:SSF47240	EnsemblPlantsGene:Solyc06g053480.2	EnsemblPlants:Solyc06g053480.2.1	UniParc:UPI00027674AB

Description

Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G43710) UniProtKB/Swiss-Prot;Acc:O22832]

Coordinates

chr6:+:36280533..36284863

Molecular Weight (calculated)

45240.0 Da

IEP (calculated)

6.448

GRAVY (calculated)

-0.419

Length

397 amino acids

Sequence
(BLAST)

001: MALKLNAFNF QSHKYSSSFV HPPMLSLRSP KFFMAASLTS GTKEVENLKK PFSPPREVHV QVTHSMPPQK IEIFKSLEGW AEQNLLTLLK PVEKSWQPQD
101: FLPDPASDGF HDQVKELRER AKELPDDYLV VLVGDMITEE ALPTYQSMIN TLDGVRDETG ASPTSWAIWT RAWTAEENRH GDLLNKYLYL SGRVDMRAIE
201: KTIQYLIGSG MDPRTENSPY LGYIYTSFQE RATFISHGNT ARFAKEHGDI KLAQICGTIA ADEKRHETAY TKIVEKLFEI DPDGTVLAFA DMMRKKIAMP
301: AHLMYDGRDD NLFDHFSAVA QRLGVYTASD YADILEFLVG RWKVSDLTGL SGEGRKAQEY LCGLTARIRR LEERAQVRAK QGPIMPFSWI YDREVQL

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.