Factsheet for Zm00001d012033_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04113	Sorghum	plastid	96.68	95.47
Zm00001d042344_P002	Maize	plastid	97.19	92.48
Os01t0919900-01	Rice	plastid	92.09	90.25
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	37.5	89.63
TraesCS3D01G421700.1	Wheat	plastid	87.24	87.24
TraesCS3B01G463000.1	Wheat	plastid	87.24	87.02
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	32.91	81.65
CDY44250	Canola	plastid	79.59	78.2
CDX79807	Canola	plastid	79.85	78.05
KRH71270	Soybean	endoplasmic reticulum, nucleus	77.81	78.01
GSMUA_Achr7P22860_001	Banana	plastid	71.68	77.84
Bra004778.1-P	Field mustard	plastid	79.59	77.81
Bra000321.1-P	Field mustard	plastid	78.83	77.64
CDX83464	Canola	plastid	78.83	77.64
Solyc06g053480.2.1	Tomato	plastid	78.57	77.58
CDY17916	Canola	plastid	78.83	77.44
VIT_05s0094g00750.t01	Wine grape	plastid	63.52	77.09
AT2G43710.1	Thale cress	plastid	78.83	77.06
GSMUA_Achr8P08750_001	Banana	plastid	69.39	77.05
Zm00001d025170_P001	Maize	plastid	77.04	77.04
Zm00001d004019_P001	Maize	plastid	77.04	77.04
VIT_00s0499g00030.t01	Wine grape	plastid	77.04	76.84
PGSC0003DMT400042118	Potato	plastid	77.81	76.83
KRH50195	Soybean	plastid	77.81	75.87
Solyc03g063110.2.1	Tomato	plastid	76.02	75.83
PGSC0003DMT400002555	Potato	plastid	76.02	75.83
VIT_12s0034g00180.t01	Wine grape	cytosol	20.15	74.53
HORVU3Hr1G094050.3	Barley	plastid	87.24	73.55
PGSC0003DMT400041874	Potato	plastid	73.47	73.28
Solyc11g008680.1.1	Tomato	plastid	73.21	73.03
TraesCS3A01G426800.3	Wheat	plastid	84.69	68.88
GSMUA_Achr5P25160_001	Banana	plastid	67.6	67.26
VIT_12s0034g00190.t01	Wine grape	extracellular	27.3	64.07
Zm00001d012221_P001	Maize	plastid	61.48	63.42
Zm00001d050552_P001	Maize	plastid	69.39	61.82
Zm00001d030165_P001	Maize	cytosol	49.49	57.74
Zm00001d024273_P001	Maize	plastid	50.0	46.23
Zm00001d021059_P001	Maize	plastid	46.94	44.99
Zm00001d014498_P001	Maize	plastid	46.68	44.85
Zm00001d030328_P001	Maize	mitochondrion	43.62	39.4
Zm00001d025262_P001	Maize	mitochondrion, plastid	26.53	24.53

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:100192652	MapMan:5.1.7.1	ProteinID:AQK98675.1	UniProt:B6T7F2	EMBL:EU960917
InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006629
GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300
GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155
PANTHER:PTHR31155:SF11	InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI000182C74D	EnsemblPlantsGene:Zm00001d012033	EnsemblPlants:Zm00001d012033_P002
EnsemblPlants:Zm00001d012033_T002	SEG:seg	:	:	:	:

Description

stearoyl-acyl-carrier-protein desaturase2 stearoyl-acyl-carrier-protein desaturase2

Coordinates

chr8:+:166838943..166842661

Molecular Weight (calculated)

44466.1 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.395

Length

392 amino acids

Sequence
(BLAST)

001: MALRLHDVAL CLSPPLAARR RSGGSFVAVA SMTSAAVSTR VENKKPFAPP REVHVQVTHS MPSHKIEIFK SLDDWARDNI LTHLKPVEKC WQPQDFLPDP
101: ASEGFHDEVK ELRERAKEIP DDYFVCLVGD MITEEALPTY QTMLNTLDGV RDETGASPTA WAVWTRAWTA EENRHGDLLN KYMYLTGRVD MRQIEKTIQY
201: LIGSGMDPRT ENNPYLGFIY TSFQERATFI SHGNTARHAK DFGDLKLAQI CGIIASDEKR HETAYTKIVE KLFEIDPDGT VVALADMMKK KISMPAHLMF
301: DGQDDKLFEH FSMVAQRLGV YTARDYADIL EFLVDRWKVA DLTGLSGEGN KAQDYLCTLA SRIRRLDERA QSRAKKAGTL PFSWVYGREV QL

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.