Factsheet for Os01t0919900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
vacuole 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012033_P002	Maize	mitochondrion	90.25	92.09
EES04113	Sorghum	plastid	90.75	91.44
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	37.25	90.85
TraesCS3D01G421700.1	Wheat	plastid	87.5	89.29
TraesCS3B01G463000.1	Wheat	plastid	87.5	89.06
Zm00001d042344_P002	Maize	plastid	90.0	87.38
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	32.5	82.28
GSMUA_Achr7P22860_001	Banana	plastid	71.75	79.5
Os04t0379900-01	Rice	plastid	76.75	78.72
KRH71270	Soybean	endoplasmic reticulum, nucleus	76.75	78.52
Solyc06g053480.2.1	Tomato	plastid	77.75	78.34
CDY44250	Canola	plastid	78.0	78.2
CDY17916	Canola	plastid	78.0	78.2
GSMUA_Achr8P08750_001	Banana	plastid	69.0	78.19
CDX79807	Canola	plastid	78.25	78.05
Bra004778.1-P	Field mustard	plastid	78.25	78.05
VIT_05s0094g00750.t01	Wine grape	plastid	63.0	78.02
Bra000321.1-P	Field mustard	plastid	77.5	77.89
CDX83464	Canola	plastid	77.5	77.89
VIT_00s0499g00030.t01	Wine grape	plastid	76.5	77.86
AT2G43710.1	Thale cress	plastid	78.0	77.81
PGSC0003DMT400042118	Potato	plastid	77.0	77.58
PGSC0003DMT400002555	Potato	plastid	76.0	77.35
Solyc03g063110.2.1	Tomato	plastid	75.75	77.1
KRH50195	Soybean	plastid	76.75	76.37
VIT_12s0034g00180.t01	Wine grape	cytosol	20.0	75.47
HORVU3Hr1G094050.3	Barley	plastid	87.5	75.27
Solyc11g008680.1.1	Tomato	plastid	73.5	74.81
PGSC0003DMT400041874	Potato	plastid	73.25	74.55
TraesCS3A01G426800.3	Wheat	plastid	84.25	69.92
GSMUA_Achr5P25160_001	Banana	plastid	67.75	68.78
VIT_12s0034g00190.t01	Wine grape	extracellular	27.0	64.67
Os02t0504800-01	Rice	plastid	50.75	63.04
Os01t0880800-01	Rice	plastid	59.75	62.73
Os08t0200100-01	Rice	plastid	47.75	47.28
Os03t0423300-01	Rice	plastid	47.25	45.22
Os08t0199400-01	Rice	plastid	43.75	41.77
Os03t0741000-00	Rice	plastid	26.5	35.33
Os06t0503800-00	Rice	plastid	20.25	33.2

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:4327738	MapMan:5.1.7.1	UniProt:A0A0N7KEB1	ProteinID:BAS75921.1	InterPro:Fatty_acid_desaturase-2
InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0006950
GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	GO:GO:0102786
InterPro:IPR012348	EnsemblPlantsGene:Os01g0919900	EnsemblPlants:Os01t0919900-01	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155
PANTHER:PTHR31155:SF11	InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI0000DD8E7F	RefSeq:XP_015622023.1	SEG:seg

Description

fatty-acid desaturase OsSSI2Similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) (Delta(9) stearoyl-acyl carrier protein desaturase). (Os01t0919900-01);Similar to Acyl-desaturase. (Os01t0919900-02)

Coordinates

chr1:-:40146818..40150808

Molecular Weight (calculated)

45323.1 Da

IEP (calculated)

7.066

GRAVY (calculated)

-0.432

Length

400 amino acids

Sequence
(BLAST)

001: MASRMALRPN DVTLRLTPPL AAAARRNRRA AAGGVRVYAV ASGAVSTKVE NKKPFAPPRE VHVQVTHSMP PQKIEIFKSL DDWARDNILS HLKPVEKCWQ
101: PQDFLPDPAS DGFHDEVKEL RERAKEIPDD YFVCLVGDMI TEEALPTYQT MLNTLDGVRD ETGASPTAWA VWTRAWTAEE NRHGDLLNKY LYLTGRVDMR
201: QIEKTIQYLI GSGMDPRTEN NPYLGFIYTS FQERATFISH GNTARHAKDF GDLKLAQICG IIASDEKRHE TAYTKIVEKL FEIDPDGTVL AFADMMKKKI
301: SMPAHLMFDG EDDKLFEHFS MVAQRLGVYT AKDYADILEF LVSRWKISDL TGLSSEGNKA QDYLCTLAAR IRRLDERAQS RAKKAGTLPF SWVYGREVQL

Best Arabidopsis Sequence Match ( AT2G43710.2 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKSVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.