Factsheet for Os04t0379900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10606	Sorghum	plastid	92.05	91.58
Zm00001d025170_P001	Maize	plastid	91.03	90.56
Zm00001d004019_P001	Maize	plastid	90.51	90.05
TraesCS2B01G298000.1	Wheat	plastid	90.0	89.54
TraesCS2D01G279500.2	Wheat	golgi, plastid	89.74	89.29
TraesCS2A01G280700.2	Wheat	plastid	89.74	89.29
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	37.44	89.02
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	35.13	86.71
HORVU2Hr1G068670.2	Barley	mitochondrion, plastid	90.26	79.1
GSMUA_Achr7P22860_001	Banana	plastid	71.28	77.01
Os01t0919900-01	Rice	plastid	78.72	76.75
Solyc06g053480.2.1	Tomato	plastid	77.95	76.57
PGSC0003DMT400042118	Potato	plastid	77.69	76.32
VIT_00s0499g00030.t01	Wine grape	plastid	76.67	76.08
PGSC0003DMT400002555	Potato	plastid	75.9	75.32
KRH71270	Soybean	endoplasmic reticulum, nucleus	75.38	75.19
CDY17916	Canola	plastid	76.92	75.19
AT2G43710.1	Thale cress	plastid	77.18	75.06
Solyc03g063110.2.1	Tomato	plastid	75.38	74.81
CDY44250	Canola	plastid	76.15	74.44
Bra000321.1-P	Field mustard	plastid	75.9	74.37
CDX83464	Canola	plastid	75.9	74.37
VIT_05s0094g00750.t01	Wine grape	plastid	61.54	74.3
Solyc11g008680.1.1	Tomato	plastid	74.87	74.3
GSMUA_Achr8P08750_001	Banana	plastid	67.18	74.22
Bra004778.1-P	Field mustard	plastid	76.15	74.06
CDX79807	Canola	plastid	76.15	74.06
PGSC0003DMT400041874	Potato	plastid	74.62	74.05
KRH50195	Soybean	plastid	76.15	73.88
VIT_12s0034g00180.t01	Wine grape	cytosol	19.74	72.64
GSMUA_Achr5P25160_001	Banana	plastid	66.15	65.48
Os02t0504800-01	Rice	plastid	53.33	64.6
Os01t0880800-01	Rice	plastid	62.82	64.3
VIT_12s0034g00190.t01	Wine grape	extracellular	24.62	57.48
Os08t0200100-01	Rice	plastid	50.0	48.27
Os03t0423300-01	Rice	plastid	50.26	46.89
Os08t0199400-01	Rice	plastid	47.95	44.63
Os03t0741000-00	Rice	plastid	26.67	34.67
Os06t0503800-00	Rice	plastid	20.77	33.2

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:4335627	MapMan:5.1.7.1	EMBL:AK065340	ProteinID:BAF14508.1	ProteinID:BAS88879.1
ProteinID:CAE03992.1	EMBL:D38753	ProteinID:EEE60868.1	InterPro:FADS-2_CS	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300
GO:GO:0046872	GO:GO:0055114	GO:GO:0102786	InterPro:IPR012348	EnsemblPlantsGene:Os04g0379900	EnsemblPlants:Os04t0379900-01
PFAM:PF03405	PIRSF:PIRSF000346	ScanProsite:PS00574	PANTHER:PTHR31155	PANTHER:PTHR31155:SF11	UniProt:Q40731
InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI00004FBCC0	RefSeq:XP_015636259.1	SEG:seg	:

Description

Similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase). (Os04t0379900-01)

Coordinates

chr4:-:18560190..18564376

Molecular Weight (calculated)

44343.8 Da

IEP (calculated)

7.012

GRAVY (calculated)

-0.490

Length

390 amino acids

Sequence
(BLAST)

001: MAFAASHTAS PSSCGGVAQR RSNGMSPVVA MASTINRVKT AKKPYTPPRE VHLQVKHSLP PQKREIFDSL QPWAKENLLN LLKPVEKSWQ PQDFLPDPSS
101: DGFYDEVKEL RERAKEIPDD YFVCLVGDMV TEEALPTYQT MLNTLDGVRD ETGASPTTWA VWTRAWTAEE NRHGDLLNKY MYLTGRVDMK QIEKTIQYLI
201: GSGMDPGTEN NPYLGFLYTS FQERATFISH GNTARHAKEY GDLKLAQICG TIAADEKRHE TAYTKIVEKL FEIDPDYTVL AFADMMRKKI SMPAHLMYDG
301: KDDNLFEHFS AVAQRLGVYT ARDYADILEF LVQRWKVADL TGLSGEGRRA QDFVCTLAPR IRRLDERAQA RAKQAPVIPF SWVYDRKVQL

Best Arabidopsis Sequence Match ( AT2G43710.2 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKSVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.