Factsheet for GSMUA_Achr6P27590_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

plastid 3
vacuole 1
peroxisome 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	87.97	84.76
GSMUA_Achr5P25190_001	Banana	mitochondrion	27.22	65.15
VIT_12s0034g00180.t01	Wine grape	cytosol	27.22	40.57
GSMUA_Achr8P32640_001	Banana	cytosol	67.72	39.19
GSMUA_Achr7P22860_001	Banana	plastid	87.34	38.23
GSMUA_Achr6P01210_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	68.99	37.33
GSMUA_Achr8P08750_001	Banana	plastid	81.65	36.54
EES10606	Sorghum	plastid	87.34	35.2
Os04t0379900-01	Rice	plastid	86.71	35.13
Zm00001d004019_P001	Maize	plastid	85.44	34.44
Zm00001d025170_P001	Maize	plastid	85.44	34.44
VIT_00s0499g00030.t01	Wine grape	plastid	84.18	33.84
GSMUA_Achr7P03060_001	Banana	plastid	66.46	33.33
CDY44250	Canola	plastid	83.54	33.08
CDY17916	Canola	plastid	83.54	33.08
CDX79807	Canola	plastid	83.54	32.92
Bra004778.1-P	Field mustard	plastid	83.54	32.92
AT2G43710.1	Thale cress	plastid	83.54	32.92
Bra000321.1-P	Field mustard	plastid	82.91	32.91
CDX83464	Canola	plastid	82.91	32.91
Zm00001d012033_P002	Maize	mitochondrion	81.65	32.91
Solyc06g053480.2.1	Tomato	plastid	82.28	32.75
GSMUA_Achr5P25160_001	Banana	plastid	81.65	32.74
TraesCS2D01G279500.2	Wheat	golgi, plastid	81.01	32.65
TraesCS2B01G298000.1	Wheat	plastid	81.01	32.65
TraesCS2A01G280700.2	Wheat	plastid	81.01	32.65
VIT_05s0094g00750.t01	Wine grape	plastid	66.46	32.51
Os01t0919900-01	Rice	plastid	82.28	32.5
PGSC0003DMT400042118	Potato	plastid	81.65	32.49
TraesCS3D01G421700.1	Wheat	plastid	80.38	32.4
TraesCS3B01G463000.1	Wheat	plastid	80.38	32.32
KRH71270	Soybean	endoplasmic reticulum, nucleus	79.75	32.23
TraesCS5D01G131500.1	Wheat	plastid	77.85	32.2
EES04113	Sorghum	plastid	80.38	31.99
TraesCS5B01G123200.1	Wheat	plastid	77.85	31.95
TraesCS5A01G123600.2	Wheat	plastid	77.85	31.95
Solyc03g063110.2.1	Tomato	plastid	79.11	31.81
PGSC0003DMT400002555	Potato	plastid	79.11	31.81
HORVU5Hr1G039730.1	Barley	plastid	77.22	31.69
KRH50195	Soybean	plastid	80.38	31.59
Solyc11g008680.1.1	Tomato	plastid	78.48	31.55
PGSC0003DMT400041874	Potato	plastid	77.85	31.3
Zm00001d042344_P002	Maize	plastid	81.01	31.07
TraesCS5D01G548700.1	Wheat	plastid	73.42	29.67
TraesCS5B01G539600.1	Wheat	plastid	72.15	29.16
HORVU5Hr1G123110.1	Barley	mitochondrion, plastid	73.42	29.07
HORVU2Hr1G068670.2	Barley	mitochondrion, plastid	81.65	28.99
TraesCS4A01G326700.1	Wheat	plastid	74.05	28.61
KXG30261	Sorghum	plastid	73.42	27.88
HORVU3Hr1G094050.3	Barley	plastid	80.38	27.31
Zm00001d050552_P001	Maize	plastid	73.42	26.36
TraesCS3A01G426800.3	Wheat	plastid	80.38	26.35
VIT_12s0034g00190.t01	Wine grape	extracellular	27.22	25.75
Os02t0504800-01	Rice	plastid	50.63	24.84
GSMUA_Achr5P25180_001	Banana	cytosol	8.86	8.48

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G27590_001	EnsemblPlants:GSMUA_Achr6P27590_001	EnsemblPlants:GSMUA_Achr6T27590_001	InterPro:IPR012348
UniProt:M0TAQ4	PFAM:PF03405	PANTHER:PTHR31155	PANTHER:PTHR31155:SF11	InterPro:RNR-like	SUPFAM:SSF47240
UniParc:UPI0002966BF0	:	:	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G27590_001]

Coordinates

chr6:+:28060254..28064825

Molecular Weight (calculated)

17972.7 Da

IEP (calculated)

9.053

GRAVY (calculated)

-0.421

Length

158 amino acids

Sequence
(BLAST)

001: MKQIEKTIQY LIGSGMDPRT ENSPYLGFIY TSFQERATFV SHGNTARHAK EYGDLKLAQI CGTIAADEKR HETAYTKIVE KLFEIDPDGT MLAFADMMKK
101: KISMPAHLIV LSGEASQAQD FVCTLAPRIR RLEERAQGKA KQSPRIPFSW INYREVQL

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.