Factsheet for PGSC0003DMT400042118

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
vacuole 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g053480.2.1	Tomato	plastid	97.73	97.73
GSMUA_Achr8P00820_001	Banana	cytosol, nucleus, peroxisome	35.77	86.59
VIT_05s0094g00750.t01	Wine grape	plastid	70.03	86.07
KRH71270	Soybean	endoplasmic reticulum, nucleus	84.38	85.68
Bra000321.1-P	Field mustard	plastid	84.89	84.67
CDX83464	Canola	plastid	84.89	84.67
CDX79807	Canola	plastid	85.14	84.29
CDY44250	Canola	plastid	84.63	84.21
AT2G43710.1	Thale cress	plastid	84.89	84.04
CDY17916	Canola	plastid	84.38	83.96
KRH50195	Soybean	plastid	84.38	83.33
Bra004778.1-P	Field mustard	plastid	84.13	83.29
GSMUA_Achr6P27590_001	Banana	nucleus, peroxisome, plastid	32.49	81.65
VIT_12s0034g00180.t01	Wine grape	cytosol	21.41	80.19
PGSC0003DMT400002555	Potato	plastid	78.34	79.13
TraesCS3B01G463000.1	Wheat	plastid	77.08	77.86
TraesCS3D01G421700.1	Wheat	plastid	76.83	77.81
Zm00001d012033_P002	Maize	mitochondrion	76.83	77.81
Os04t0379900-01	Rice	plastid	76.32	77.69
TraesCS2A01G280700.2	Wheat	plastid	76.32	77.3
EES04113	Sorghum	plastid	77.08	77.08
TraesCS2D01G279500.2	Wheat	golgi, plastid	76.07	77.04
TraesCS2B01G298000.1	Wheat	plastid	76.07	77.04
Os01t0919900-01	Rice	plastid	77.58	77.0
PGSC0003DMT400041874	Potato	plastid	76.07	76.84
EES10606	Sorghum	plastid	75.82	76.79
Zm00001d025170_P001	Maize	plastid	74.81	75.77
Zm00001d004019_P001	Maize	plastid	74.56	75.51
GSMUA_Achr7P22860_001	Banana	plastid	68.51	75.35
Zm00001d042344_P002	Maize	plastid	77.33	74.51
GSMUA_Achr8P08750_001	Banana	plastid	65.49	73.65
TraesCS5A01G123600.2	Wheat	plastid	69.02	71.17
TraesCS5D01G131500.1	Wheat	plastid	68.26	70.94
HORVU5Hr1G039730.1	Barley	plastid	68.51	70.65
TraesCS5B01G123200.1	Wheat	plastid	68.51	70.65
VIT_12s0034g00190.t01	Wine grape	extracellular	29.22	69.46
TraesCS5D01G548700.1	Wheat	plastid	67.25	68.29
HORVU2Hr1G068670.2	Barley	mitochondrion, plastid	76.32	68.09
TraesCS5B01G539600.1	Wheat	plastid	66.25	67.26
HORVU5Hr1G123110.1	Barley	mitochondrion, plastid	67.0	66.67
HORVU3Hr1G094050.3	Barley	plastid	77.58	66.24
KXG30261	Sorghum	plastid	68.77	65.62
TraesCS4A01G326700.1	Wheat	plastid	67.51	65.53
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	42.57	65.0
PGSC0003DMT400013389	Potato	cytosol	42.32	64.86
GSMUA_Achr5P25160_001	Banana	plastid	63.48	63.96
TraesCS3A01G426800.3	Wheat	plastid	75.82	62.45
Zm00001d050552_P001	Maize	plastid	68.77	62.05
Os02t0504800-01	Rice	plastid	50.13	61.8
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	21.66	58.9
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	18.64	57.81
PGSC0003DMT400079075	Potato	plastid	55.92	56.92
PGSC0003DMT400079085	Potato	plastid	55.42	56.85
PGSC0003DMT400095159	Potato	plastid	54.41	56.25
PGSC0003DMT400079080	Potato	plastid	27.46	49.55

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:102599603	MapMan:5.1.7.1	InterPro:FADS-2_CS	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF
GO:GO:0002213	GO:GO:0003674	GO:GO:0003824	GO:GO:0004768	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009058	GO:GO:0009507
GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009605	GO:GO:0009607
GO:GO:0009987	GO:GO:0016491	GO:GO:0042742	GO:GO:0045300	GO:GO:0046872	GO:GO:0051607
GO:GO:0055114	InterPro:IPR012348	UniProt:M1BCJ0	PFAM:PF03405	EnsemblPlantsGene:PGSC0003DMG400016331	PGSC:PGSC0003DMG400016331
EnsemblPlants:PGSC0003DMT400042118	PIRSF:PIRSF000346	ScanProsite:PS00574	PANTHER:PTHR31155	PANTHER:PTHR31155:SF11	InterPro:RNR-like
SUPFAM:SSF47240	UniParc:UPI000296F258	RefSeq:XP_006350702.1	:	:	:

Description

Acyl-[acyl-carrier-protein] desaturase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400016331]

Coordinates

chr6:+:39270651..39275095

Molecular Weight (calculated)

45145.9 Da

IEP (calculated)

6.202

GRAVY (calculated)

-0.410

Length

397 amino acids

Sequence
(BLAST)

001: MALKLNAFNV QSHKYSSSFA LPPMLSLRSP KFFMAASLSS GTKEVEDLKK PFSPPREVHV QVTHSMPPQK IEIFKSLEGW AEQNLLTLLK PVEKSWQPQD
101: FLPDPASDGF HDQVKELRER AKELPDDYLV VLVGDMITEE ALPTYQSMIN TLDGVRDETG ASPTSWAIWT RAWTAEENRH GDLLNKYLYL SGRVDMRAIE
201: KTIQYLIGSG MDPRTENSPY LGYIYTSFQE RATFISHGNT ARFAKEHGDI KLAQICGTIA ADEKRHETAY TKIVEKLFEI DPDGTVLAFA DMMRKKIAMP
301: AHLMYDGRDD NLFDHFSAVA QRLGVYTASD YADILEFLVG RWKVSDLTGL SGEGRKAQEY VCGLTARIRR LEERAQMRAK EGPIMPFSWI YDREVKL

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.