Factsheet for PGSC0003DMT400079078

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytoskeleton

Predictor Summary:

nucleus 1
plastid 3
peroxisome 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	38.46	78.12
PGSC0003DMT400079075	Potato	plastid	98.08	65.38
PGSC0003DMT400079085	Potato	plastid	92.69	62.27
Solyc06g054670.1.1	Tomato	plastid	88.85	60.95
GSMUA_Achr8P32640_001	Banana	cytosol	59.23	56.41
PGSC0003DMT400095159	Potato	plastid	78.08	52.86
PGSC0003DMT400013389	Potato	cytosol	52.31	52.51
KRH15948	Soybean	cytosol, nucleus	67.69	52.23
VIT_18s0001g15460.t01	Wine grape	plastid	71.92	48.07
GSMUA_Achr7P03060_001	Banana	plastid	57.69	47.62
KRH18113	Soybean	plastid	67.31	46.3
EES01858	Sorghum	mitochondrion, plastid	67.31	46.05
Zm00001d012221_P001	Maize	plastid	66.92	45.79
AT1G43800.1	Thale cress	plastid	68.85	45.78
HORVU3Hr1G091320.2	Barley	plastid	66.15	45.5
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	65.77	45.24
Os01t0880800-01	Rice	plastid	66.15	45.14
PGSC0003DMT400041874	Potato	plastid	68.08	45.04
TraesCS3D01G403800.1	Wheat	plastid	66.15	45.03
PGSC0003DMT400002555	Potato	plastid	66.15	43.77
PGSC0003DMT400042118	Potato	plastid	65.0	42.57
KRH18114	Soybean	cytosol	59.23	41.07
PGSC0003DMT400041719	Potato	cytosol, peroxisome, plastid	16.54	29.45
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	28.85	28.09
PGSC0003DMT400079080	Potato	plastid	23.08	27.27
VIT_10s0003g04810.t01	Wine grape	cytosol	11.54	25.0

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348	UniProt:M1D168
PFAM:PF03405	EnsemblPlantsGene:PGSC0003DMG401030775	PGSC:PGSC0003DMG401030775	EnsemblPlants:PGSC0003DMT400079078	PIRSF:PIRSF000346	PANTHER:PTHR31155
PANTHER:PTHR31155:SF3	InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI000294AD73	SEG:seg	:

Description

Acyl-[acyl-carrier-protein] desaturase [Source:PGSC_GENE;Acc:PGSC0003DMG401030775]

Coordinates

chr6:+:41126858..41129142

Molecular Weight (calculated)

29849.2 Da

IEP (calculated)

8.307

GRAVY (calculated)

-0.293

Length

260 amino acids

Sequence
(BLAST)

001: MLTEDVLPTY QTVINTWDGV RDETGSSPCP WAIWTRAWTA EENRHGDLLR TYLYISGRVD MLMVEKTLQY LIGAGIDIGL ENNPYLGYVY ASFQERATCS
101: SHGNMARLAI KGGDPMLAHI CGTIAADEKR HEHVYTRIVK KLLEVDPNAT MLAIAHMMKK KIIMPMHLIY DGQDPNIFEH FSAIGERQGI YTSRHYAEIL
201: EFFITRWKLE KLEGLIGEAR RAQDYVCGLP PRVRKLESRA KKIEPRQVKF SWIFNKQVSA

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.