Factsheet for VIT_18s0001g15460.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g02500.t01	Wine grape	cytosol	16.97	97.06
VIT_10s0003g04810.t01	Wine grape	cytosol	27.51	89.17
KRH15948	Soybean	cytosol, nucleus	72.24	83.38
GSMUA_Achr8P32640_001	Banana	cytosol	57.84	82.42
KRH18113	Soybean	plastid	73.01	75.13
PGSC0003DMT400079078	Potato	cytoskeleton, peroxisome, plastid	48.07	71.92
Solyc06g059700.2.1	Tomato	cytosol	25.96	71.13
GSMUA_Achr7P03060_001	Banana	plastid	57.58	71.11
VIT_05s0094g00550.t01	Wine grape	cytosol	47.56	70.88
PGSC0003DMT400079076	Potato	cytosol, peroxisome, plastid	23.14	70.31
EES01858	Sorghum	mitochondrion, plastid	68.38	70.0
HORVU3Hr1G091320.2	Barley	plastid	67.87	69.84
TraesCS3D01G403800.1	Wheat	plastid	68.38	69.63
TraesCS3A01G408700.1	Wheat	mitochondrion, plastid	67.61	69.58
Zm00001d012221_P001	Maize	plastid	67.61	69.21
PGSC0003DMT400013389	Potato	cytosol	45.5	68.34
Os01t0880800-01	Rice	plastid	66.84	68.24
VIT_12s0034g00180.t01	Wine grape	cytosol	18.51	67.92
Solyc01g009960.2.1	Tomato	plastid	52.44	67.77
VIT_05s0094g00730.t01	Wine grape	plastid	62.47	67.13
VIT_00s0499g00030.t01	Wine grape	plastid	67.1	66.41
VIT_05s0094g00580.t01	Wine grape	plastid	61.44	66.02
Solyc06g054670.1.1	Tomato	plastid	62.98	64.64
PGSC0003DMT400079075	Potato	plastid	64.27	64.1
PGSC0003DMT400079085	Potato	plastid	63.5	63.82
KRH18114	Soybean	cytosol	61.44	63.73
PGSC0003DMT400095159	Potato	plastid	62.21	63.02
Solyc06g059720.2.1	Tomato	plastid	62.47	62.79
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	42.93	62.55
VIT_05s0094g00750.t01	Wine grape	plastid	51.67	62.23
Solyc06g059710.2.1	Tomato	plastid	60.93	61.24
VIT_05s0094g00740.t01	Wine grape	plastid	54.5	59.38
VIT_00s0327g00070.t01	Wine grape	cytosol, peroxisome, plastid	9.25	59.02
VIT_05s0094g00650.t01	Wine grape	plastid	56.3	54.34
PGSC0003DMT400079080	Potato	plastid	28.53	50.45
VIT_12s0034g00190.t01	Wine grape	extracellular	21.59	50.3
VIT_05s0094g00630.t01	Wine grape	plastid	19.79	45.83

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:100255873	wikigene:100255873	MapMan:5.1.7.1	EMBL:AM426141	ProteinID:CAN60210
ProteinID:CAN60210.1	ProteinID:CCB46100	ProteinID:CCB46100.1	UniProt:F6H099	InterPro:FADS-2_CS	EMBL:FN595227
InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016491	GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348	EntrezGene:LOC100255873
wikigene:LOC100255873	PFAM:PF03405	PIRSF:PIRSF000346	ScanProsite:PS00574	PANTHER:PTHR31155	PANTHER:PTHR31155:SF3
InterPro:RNR-like	SUPFAM:SSF47240	UniParc:UPI00015C7F54	ArrayExpress:VIT_18s0001g15460	EnsemblPlantsGene:VIT_18s0001g15460	EnsemblPlants:VIT_18s0001g15460.t01
unigene:Vvi.3348	RefSeq:XP_002264795	RefSeq:XP_002264795.1	SEG:seg	:	:

Description

Acyl-[acyl-carrier-protein] desaturase [Source:UniProtKB/TrEMBL;Acc:F6H099]

Coordinates

chr18:+:13616618..13618309

Molecular Weight (calculated)

44241.0 Da

IEP (calculated)

6.532

GRAVY (calculated)

-0.421

Length

389 amino acids

Sequence
(BLAST)

001: MEALIAVPKQ RFPCTPRGRN LTRPLRPPRP SLTFRQQTFS AVAAPARQQV THSMPPEKVE VFKSLEGWAS EWVLPLLKPV EQLWQPQDFL PDPAQPFDAF
101: SEQVRELRDR TAELPDEYFV VLVGDMITED ALPTYQTMIN TLDGVRDETG ASASPWAKWT RSWTAEENRH GDLLRTYLYL SGRVDMRMIE RTVQYLISAG
201: MDPGTENNPY LGFVYTSFQE RATFVSHGNT ARLAKDGGDP VLARICGSIA ADERRHENAY SRIVEKLLEV DPTGAMLAIA DMMRKKITMP AHLMYDGCDP
301: RLFEHFSAVA QRLGVYTADD YADILEFLIG RWKLEKLEGL TGEGRRAQDF VCGLAPRIRK LQERADERAR KMGPQGARFS WIFNKEVAL

Best Arabidopsis Sequence Match ( AT1G43800.1 )
(BLAST)

001: MLAHKSLLSF TTQWATLMPS PSTFLASRPR GPAKISAVAA PVRPALKHQN KIHTMPPEKM EIFKSLDGWA KDQILPLLKP VDQCWQPASF LPDPALPFSE
101: FTDQVRELRE RTASLPDEYF VVLVGDMITE DALPTYQTMI NTLDGVRDET GASESAWASW TRAWTAEENR HGDLLRTYLY LSGRVDMLMV ERTVQHLIGS
201: GMDPGTENNP YLGFVYTSFQ ERATFVSHGN TARLAKSAGD PVLARICGTI AADEKRHENA YVRIVEKLLE IDPNGAVSAV ADMMRKKITM PAHLMTDGRD
301: PMLFEHFSAV AQRLEVYTAD DYADILEFLV GRWRLEKLEG LTGEGQRAQE FVCGLAQRIR RLQERADERA KKLKKTHEVC FSWIFDKQIS V

Arabidopsis Description

S-ACP-DES6Stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84VY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.