Factsheet for VIT_05s0094g00730.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0094g00550.t01	Wine grape	cytosol	67.4	93.49
VIT_05s0094g00580.t01	Wine grape	plastid	91.99	91.99
VIT_05s0094g00740.t01	Wine grape	plastid	82.87	84.03
VIT_00s0327g00070.t01	Wine grape	cytosol, peroxisome, plastid	12.71	75.41
VIT_05s0094g00750.t01	Wine grape	plastid	65.75	73.68
VIT_00s0499g00030.t01	Wine grape	plastid	79.83	73.54
VIT_02s0012g02500.t01	Wine grape	cytosol	13.81	73.53
VIT_12s0034g00180.t01	Wine grape	cytosol	20.99	71.7
VIT_05s0094g00650.t01	Wine grape	plastid	78.73	70.72
AT3G02630.1	Thale cress	plastid	74.31	67.93
CDX74242	Canola	plastid	74.03	67.68
Bra001057.1-P	Field mustard	plastid	74.03	67.68
Bra021427.1-P	Field mustard	plastid	73.76	67.59
CDX92006	Canola	plastid	73.76	67.42
CDY34739	Canola	plastid	50.28	66.91
CDX69459	Canola	plastid	72.65	66.25
Bra008631.1-P	Field mustard	plastid	72.65	66.25
CDY26510	Canola	plastid	72.38	66.0
AT5G16240.1	Thale cress	plastid	71.82	65.99
VIT_18s0001g15460.t01	Wine grape	plastid	67.13	62.47
VIT_12s0034g00190.t01	Wine grape	extracellular	28.73	62.28
VIT_05s0094g00630.t01	Wine grape	plastid	27.9	60.12
VIT_10s0003g04810.t01	Wine grape	cytosol	19.89	60.0
VIT_07s0005g03820.t01	Wine grape	nucleus, peroxisome, plastid	34.25	46.44

Protein Annotations

Gene3D:1.10.620.20	EntrezGene:100247577	wikigene:100247577	EntrezGene:100252677	wikigene:100252677	MapMan:5.1.7.1
EMBL:AM451838	ProteinID:CAN69896	ProteinID:CAN69896.1	ProteinID:CCB49392	ProteinID:CCB49392.1	UniProt:F6HB23
EMBL:FN595507	InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006629	GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0045300	GO:GO:0046872	GO:GO:0055114	InterPro:IPR012348	EntrezGene:LOC100247577	wikigene:LOC100247577
EntrezGene:LOC100252677	wikigene:LOC100252677	PFAM:PF03405	PIRSF:PIRSF000346	PANTHER:PTHR31155	PANTHER:PTHR31155:SF11
InterPro:RNR-like	SUPFAM:SSF47240	TIGR:TC55932	UniParc:UPI00021095BC	ArrayExpress:VIT_05s0094g00730	EnsemblPlantsGene:VIT_05s0094g00730
EnsemblPlants:VIT_05s0094g00730.t01	unigene:Vvi.19164	RefSeq:XP_002274652	RefSeq:XP_002274652.1	RefSeq:XP_003632083	RefSeq:XP_003632083.1
RefSeq:XP_003632096	RefSeq:XP_003632096.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:24056789..24058475

Molecular Weight (calculated)

41783.7 Da

IEP (calculated)

6.745

GRAVY (calculated)

-0.540

Length

362 amino acids

Sequence
(BLAST)

001: MASMHRSVSR EIKNTKKTSS SPRKVQVTHS MPPHKIEIFK SMENWVEENV LIHLKPVEKC WQPQDFLPHP ASDGFHERVE ELKERAKGIP DDYFVVLVGD
101: MITEEALPTY QTLFNTTDGI RDETGASPTS WATWTRAWTA EENRHGDLLN KYLYLSGRVD MKQIEKTIQY LIRAGMDFQT ENNPYLLFIY TSFQERATFI
201: SHGNTARLAK QHGDKSLAQI CGIIASDEKR HETAYTKIVE KLFEIDPNGT VLAFADRMRK KITMPALLMY DGCDDDLFEH FSAVAQRLGV YTAKDYVDNL
301: EFFVERWNVE KLTGLSSEGR KAQDYVCGLA KRLRTLEERA QEKAKQAPTI PFSWIFDREV KL

Best Arabidopsis Sequence Match ( AT2G43710.1 )
(BLAST)

001: MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKEVE SLKKPFTPPR EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW
101: QPQDFLPDPA SDGFEDQVRE LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE ENRHGDLLNK YLYLSGRVDM
201: RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
301: ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ
401: L

Arabidopsis Description

FAB2Stearoyl-[acyl-carrier-protein] 9-desaturase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22832]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.