CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001057.1-P	Field mustard	plastid	100.0	100.0
CDX92006	Canola	plastid	98.99	98.99
AT3G02630.1	Thale cress	plastid	95.45	95.45
CDY34739	Canola	plastid	65.15	94.85
CDY26510	Canola	plastid	83.84	83.63
CDX69459	Canola	plastid	83.84	83.63
VIT_05s0094g00550.t01	Wine grape	cytosol	51.01	77.39
VIT_05s0094g00730.t01	Wine grape	plastid	67.68	74.03
CDY17916	Canola	plastid	73.74	73.18
CDY44250	Canola	plastid	73.74	73.18
CDX83464	Canola	plastid	73.48	73.12
CDX79807	Canola	plastid	73.74	72.82
VIT_05s0094g00580.t01	Wine grape	plastid	65.66	71.82
VIT_05s0094g00740.t01	Wine grape	plastid	59.85	66.39
CDX69460	Canola	plastid	65.4	64.27
CDY26509	Canola	plastid	64.9	63.77
CDY57537	Canola	plastid	64.39	62.35
CDY43232	Canola	plastid	64.14	62.1
VIT_05s0094g00650.t01	Wine grape	plastid	59.09	58.06
GSMUA_Achr5P25180_001	Banana	cytosol	20.45	49.09
VIT_05s0094g00630.t01	Wine grape	plastid	20.71	48.81

Protein Annotations

Gene3D:1.10.620.20	MapMan:5.1.7.1	GO:A0A078CBL0	EnsemblPlants:CDX74242	ProteinID:CDX74242	ProteinID:CDX74242.1
InterPro:Fatty_acid_desaturase-2	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006629
GO:GO:0006631	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0045300
GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00112023001	InterPro:IPR012348	PFAM:PF03405	PIRSF:PIRSF000346
PANTHER:PTHR31155	PANTHER:PTHR31155:SF6	InterPro:RNR-like	SUPFAM:SSF47240	UniPathway:UPA00199	UniParc:UPI00025408D0

Description

BnaA03g28050D

Coordinates

chrLK031800:-:1924239..1926346

Molecular Weight (calculated)

44949.6 Da

IEP (calculated)

5.720

GRAVY (calculated)

-0.423

Length

396 amino acids

Sequence
(BLAST)

001: MAMSMDRIVV SPSSYVCRPS QARGSRSSVV SMASTIRSAS TEVTNGKKLY IPPREVHVQV KHSMPPQKLE IFKSLEGWAD ETLLTYLKPV EKSWQPTDFL
101: PEAESEGFYD QVKELRERCK ELPDEYFVVL VGDMITEEAL PTYQTMLNTL DGVRDETGAS PTPWAVWTRA WTAEENRHGD LLNKYLYLSG RVDMRQIEKT
201: IQYLIGSGMD PKTENNPYLG FIYTSFQERA TFISHGNTAR LAKDRGDLKL AQICGTIAAD EKRHETAYTK IVEKLFEIDA DGTILGLADM MKKKISMPAH
301: LMYDGQDDNL FEHFSTVAQR LGVYTAKDYA DILEFLVERW NVETLSGLSS EGHMAQDFVC GLPARIRRIE ERAQGRAKEA AKNVPFSWIF GREIRA

Best Arabidopsis Sequence Match ( AT3G02630.1 )
(BLAST)

001: MAMAMDRIVF SPSSYVYRPC QARGSRSSRV SMASTIRSAT TEVTNGRKLY IPPREVHVQV KHSMPPQKLE IFKSLEGWAD ETLLTYLKPV EKSWQPTDFL
101: PEPESEGFYD QVKELRERCK ELPDDYFVVL VGDMITEEAL PTYQTMLNTL DGVRDETGAS PTPWAIWTRA WTAEENRHGD LLNKYLYLSG RVDMRQIEKT
201: IQYLIGSGMD PKTENNPYLG FIYTSFQERA TFISHGNTAR LAKDRGDLKL AQICGTIAAD ERRHETAYTK IVEKLFEIDP DGTILGLADM MKKKISMPAH
301: LMYDGQDDNL FEHFSTVAQR LGVYTAKDYA DILEFLVERW NVETLTDLSS EGHRAQDFVC GLPARIRKIE ERAQGRAKEA AKNIPFSWIF GRNIRA

Arabidopsis Description

S-ACP-DES5Stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M879]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.